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Changelog

All notable changes to the JupyterHub deployment will be documented here. Any changes to the plugin itself will be documented in the xnat-jupyter-plugin repository.

[1.3.0] - 2024-10-22

Added

  • JHP-75: Update to JupyterLab 4.0.
  • JHP-76: Update to JupyterHub 4.0.
  • JHP-96: Add xnat/tensorflow-notebook image based on jupyter/tensorflow-notebook image. This image includes TensorFlow and other helpful packages for working with XNAT data.
  • JHP-101: Add pyradiomics to xnat/datascience-notebook and xnat/tensorflow-notebook images. This package is useful for extracting radiomic features from DICOM images.
  • JHP-102: Add highdicom to xnat/datascience-notebook. This package is useful for working with DICOM segmentation objects and other DICOM objects.
  • JHP-113: Add pygwalker to notebook images.

Fixed

  • JHP-106: From the JupyterHub 4.0 upgrade, add check_allowed method to the Authenticator class. The default behavior changes in version 5.0 so go ahead and add the method now instead of relying on the default behavior.
  • JHP-111: From the JuptyerHub 4.0 upgrade, fix websocket http 403 error in JupyterLab. This is fixed by adding the JUPYTERHUB_SINGLEUSER_EXTENSION=0 environment variable to the JupyterHub deployment. Jupyter 5.0 has fixed this issue, but we are not quite ready to upgrade to 5.0 yet.

Changed

  • JHP-87: Use persistent volume claim for session volume in k8s deployment.

[1.2.0] - 2024-06-27

Added

  • JHP-82: Support for named servers in JupyterHub. This will allow users to launch multiple servers from XNAT with different configurations.
  • JHP-93: Add ipydatagrid to xnat/datascience-notebook image. Useful for dashboard development.
  • JHP-94: Add dcmtk to xnat/datascience-notebook image. Useful for DICOM processing.

[1.1.1] - 2024-05-03

  • JHP-81: Add environmental variable for configuring TLS in the JupyterHub deployment.
  • JHP-86: Fix issue with volume name case sensitivity in helm chart pre_spawn_hook function.

[1.1.0] - 2024-03-04

Added

  • Added changelog.
  • JHP-73: Updates for dashboards. JupyterHub is now configured to accept a command from XNAT to launch a dashboard container instead of only launching notebook containers. The xnat/datascience-notebook image is updated to include numerous packages for dashboard development, including Panel, Dash, Streamlit, and Voilà.
  • JHP-77: Add GitHub workflows to build and publish the xnat/jupyterhub and xnat/data-science-notebook images to Docker Hub. Repository has migrated from Bitbucket to GitHub.

Changed

  • Updates to the helm chart to move python pre_spawn_hook, and other python code, to configmaps instead of managing it in the values.yaml file. No behavior changes.

[1.0.1] - 2023-10-12

Added

  • JHP-67: Adds a helm chart for deploying JupyterHub, configured to communicate with XNAT, to a Kubernetes cluster.