diff --git a/assets/css/style.css b/assets/css/style.css
index a230117dc..f1b1484a1 100644
--- a/assets/css/style.css
+++ b/assets/css/style.css
@@ -34,3 +34,12 @@ Slightly darken failing ontologies
.dash-status {
margin-bottom: 3px;
}
+
+/*
+Custom blockquote formatting
+*/
+.citation-blockquote {
+ padding: 5px;
+ margin-left: 20px;
+ margin-bottom: 16px;
+}
diff --git a/docs/Citation.md b/citation/Citation.md
similarity index 58%
rename from docs/Citation.md
rename to citation/Citation.md
index 88111fa18..fe3a51886 100644
--- a/docs/Citation.md
+++ b/citation/Citation.md
@@ -1,46 +1,59 @@
---
-layout: doc
+layout: citation
title: OBO Citation and Attribution Policy
---
-Open Biological and Biomedical Ontologies are used in a diversity of ways. The following guidelines are intended to promote proper attribution of the ontology creators and contributors, and to promote reproducibility in informatics applications.
+Open Biological and Biomedical Ontologies are used in a variety of ways. The following guidelines are intended to promote proper attribution of the ontology creators and contributors, and to promote reproducibility in informatics applications.
-## Referring to a single term
+
Referring to a single term
When referring to a single ontology term, use the full [Internationalized Resource Identifier (IRI)](http://tools.ietf.org/html/rfc3987), for example:
-> http://purl.obolibrary.org/obo/UBERON_0000948
+
+http://purl.obolibrary.org/obo/UBERON_0000948
+
You can use a shorter [Compact URI (CURIE)](https://www.w3.org/TR/curie/) by defining a prefix that abbreviates the first part of the IRI. For example, the prefix "UBERON" can abbreviate "http://purl.obolibrary.org/obo/UBERON_", then "http://purl.obolibrary.org/obo/UBERON_0000948" can be shortened to "[UBERON:0000948](http://purl.obolibrary.org/obo/UBERON_0000948)". A footnote like this one should be included with the first use of the prefix:
-> [UBERON:0000948](http://purl.obolibrary.org/obo/UBERON_0000948) is a Compact URI (CURIE). Here and subsequently the prefix "UBERON" expands to "http://purl.obolibrary.org/obo/UBERON_". The full identifier for the term is then
. Browsing to this address gives further information about the term.
+
In situations that allow the use of hyperlinks, every CURIE should be a hyperlink with its full IRI as its target, as in these examples.
We also recommend including the primary label of the term in quotation marks before the IRI or CURIE:
-> 'heart' ([UBERON:0000948](http://purl.obolibrary.org/obo/UBERON_0000948))
+
-## Referring to an ontology
+Referring to an ontology
To facilitate reproducibility, be specific about the version of the ontology that you are referring to by using an ontology version IRI that contains the release date:
-> http://purl.obolibrary.org/obo/uberon/releases/2016-01-26/uberon.owl
+
+http://purl.obolibrary.org/obo/uberon/releases/2016-01-26/uberon.owl
+
The ontology version IRI is indicated by the [owl:versionIRI](https://www.w3.org/2002/07/owl#versionIRI) property.
When referring to an ontology in general (not a specific version) you can use its ontology IRI:
-> http://purl.obolibrary.org/obo/uberon.owl
+
+http://purl.obolibrary.org/obo/uberon.owl
+
The ontology IRI or ontology version IRI should be accompanied by a citation of the ontology, in any context where citations are appropriate.
-## Citing an ontology
+Citing an ontology
-Some ontologies recommend citation of specific publications. Please see their respective homepages for this information. For example, [Uberon](http://obofoundry.org/ontology/uberon) lists two publications under "Cite."
+Some ontologies recommend citation of specific publications. Please see their respective homepages for this information. For example, [Uberon]({{ "ontology/uberon.html#publications" | prepend: site.baseurl }}) lists two publications under "Publications."
In addition to the recommended publication, you should also cite the ontology using its IRI and the [new data citation extension to JATS](https://peerj.com/articles/cs-1/). When no specific publication is recommended, you must cite the ontology by its IRI. Here is an example citation:
-> Mungall, C., Haendel, M., Dahdul, W., Ibrahim, N., Segerdell, E., Blackburn, D., Comte, A., Niknejad, A., and Decechi, A. (2016), Uberon Ontology, http://purl.obolibrary.org/obo/uberon/releases/2016-01-26/uberon.owl
+
+Mungall, C., Haendel, M., Dahdul, W., Ibrahim, N., Segerdell, E., Blackburn, D., Comte, A., Niknejad, A., and Decechi, A. (2016), Uberon Ontology, http://purl.obolibrary.org/obo/uberon/releases/2016-01-26/uberon.owl
+
Our ontology files list authors using the [dc:creator](http://purl.org/dc/elements/1.1/creator) property. The order of authors is not important, but you can use the primary contact for the ontology listed on the [OBO site](http://obofoundry.org) as the first author. Note that this does not necessarily include all those who have contributed directly to the ontology, via its issue tracker or on its mailing lists, for example. However, these can be readily retrieved if the proper IRI is referenced in the citation.
+
diff --git a/citation/KnownPublications.md b/citation/KnownPublications.md
new file mode 100644
index 000000000..5032e8f75
--- /dev/null
+++ b/citation/KnownPublications.md
@@ -0,0 +1,18 @@
+---
+layout: citation
+title: Known Ontology Project Publications
+---
+
+This list is generated automatically from OBO Foundry ontology metadata. It is not intended to be authoritative or exhaustive.
+
+ {% for ontology in site.ontologies %}
+ {% if ontology.publications and ontology.publications.size > 0 %}
+
{{ ontology.title }} ({{ ontology.id }})
+
+ {% endif %}
+ {% endfor %}
+
Citing the OBO Foundry
+
+To reference the OBO Foundry generally, please cite:
+
+Rebecca Jackson, Nicolas Matentzoglu, James A Overton, Randi Vita, James P Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D Diehl, Damion M Dooley, William D Duncan, Nomi L Harris, Melissa A Haendel, Suzanna E Lewis, Darren A Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M Schriml, Barry Smith, Christian J Stoeckert Jr., Nicole A Vasilevsky, Ramona L Walls, Jie Zheng, Christopher J Mungall, Bjoern Peters, **[OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies](https://academic.oup.com/database/article/doi/10.1093/database/baab069/6410158)**, Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
+
+Other papers about the OBO Foundry
+
+Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, The OBI Consortium, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, and Suzanna Lewis, **[The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration](http://www.nature.com/nbt/journal/v25/n11/abs/nbt1346.html)**, Nature Biotechnology, Volume 25, 2007, https://doi.org/10.1038/nbt1346
+
+[Google Scholar list of papers citing The OBO Foundry](https://scholar.google.ca/scholar?cites=13806088078865650870&as_sdt=2005&sciodt=0,5&hl=en)
diff --git a/docs/roles/RoleNORManager.md b/docs/roles/RoleNORManager.md
index a804179c5..b4816dc43 100644
--- a/docs/roles/RoleNORManager.md
+++ b/docs/roles/RoleNORManager.md
@@ -11,6 +11,7 @@ The New Ontology Request (NOR) Manager has these basic duties:
3. Supporting the New Ontology requestor to pass the OBO Dashboard
4. Assigning a provisional reviewer from the OBO Operations Committee
5. Removing the accepted ontology from the NOR Dashboard upon acceptance
+6. Maintaining the OBO Duty Rotation Table
### Receiving `new ontology` requests on OBO and acknowledging the receipt
@@ -78,7 +79,6 @@ In addition, some checks need to be carried out manually by the NOR manager unti
- URIs: check if it includes "https" and if it [conforms with the overall format](http://obofoundry.org/id-policy) "http://purl.obolibrary.org/obo/ONTOLOGY_"
-
- Release artefact: check if release artefacts are identified as such and ensure that, alongside a "main release", a base release is provided which **does not include imported terms**.
- Imports: Ensure that there is a mechanism in place to update imported terms (classes and properties).
@@ -98,3 +98,10 @@ If and only if the requested ontology passes the dashboard, i.e. no more "red" e
When the ontology is accepted, the OBO NOR reviewer needs to make sure that the accepted ontology is removed from the OBO NOR Dashboard.
Note 29.11.2022: There is a [work in progress](https://github.com/OBOFoundry/obo-nor.github.io/pull/23) which can deal with this step automatically, but the responsibility still stays with the OBO NOR Manager.
+
+### Maintaining the OBO Duty Rotation Table
+
+The OBO Duty Rotation Table is a Google spreadsheet available [here](https://docs.google.com/spreadsheets/d/19GrEWVnpxjnrig0iYUOiUvsZ0JDbprMh1USnRb-SXtg/edit).
+When a new member is added to the OBO Operations Committee, the OBO NOR reviewer should add the new member's name to this table. Similarly, former members should be removed from the table. The list of current OBO Operations members is maintained in the file [operations.yml](https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/_data/operations.yml).
+
+In addition, when a new ontology has been submitted, it should be added to the ['Ontology Reviewers' tab](https://docs.google.com/spreadsheets/d/19GrEWVnpxjnrig0iYUOiUvsZ0JDbprMh1USnRb-SXtg/edit?gid=1683009411#gid=1683009411) in the OBO Duty Rotation spreadsheet.
diff --git a/ontology/foodon.md b/ontology/foodon.md
index 09b42c225..2a7b412b8 100644
--- a/ontology/foodon.md
+++ b/ontology/foodon.md
@@ -20,8 +20,8 @@ description: A broadly scoped ontology representing entities which bear a “foo
domain: diet, metabolomics, and nutrition
homepage: https://foodon.org/
license:
- label: CC BY 3.0
- url: http://creativecommons.org/licenses/by/3.0/
+ label: CC BY 4.0
+ url: http://creativecommons.org/licenses/by/4.0/
preferredPrefix: FOODON
products:
- id: foodon.owl
@@ -37,6 +37,22 @@ repository: https://github.com/FoodOntology/foodon
tags:
- food
tracker: https://github.com/FoodOntology/foodon/issues/
+usages:
+- description: FoodData Central nutrition database web portal provided by USDA Agricultural Research Service.
+ examples:
+ - description: An entry for 'Apples, fuji, with skin, raw' from the FoodData Central nutrition database which is annotated with the term FOODON:00002862.
+ url: https://fdc.nal.usda.gov/fdc-app.html#/food-details/1750340/attributes
+ user: https://fdc.nal.usda.gov/
+- description: FDA GenomeTrackr surveillance program for reporting foodborne pathogen biosamples.
+ examples:
+ - description: An entry from NCBI Biosample that describes a *Samonella enterica* sample extracted from Chicken and annotated with the term FOODON:03411457.
+ url: https://www.ncbi.nlm.nih.gov/biosample/SAMN03455272
+ user: https://www.fda.gov/food/whole-genome-sequencing-wgs-program/genometrakr-network
+- description: Wiki database consolidating over 30 global food composition databases.
+ examples:
+ - description: An entry from WikiFCD that describes Walnuts and is annotated with the term FOODON:03301364.
+ url: https://wikifcd.wikibase.cloud/wiki/Item:Q568877
+ user: https://wikifcd.wikibase.cloud/wiki/Main_Page
activity_status: active
---
diff --git a/ontology/stato.md b/ontology/stato.md
index e95f33ad6..c38a5bd6d 100644
--- a/ontology/stato.md
+++ b/ontology/stato.md
@@ -18,10 +18,34 @@ license:
preferredPrefix: STATO
products:
- id: stato.owl
+publications:
+- id: https://www.ncbi.nlm.nih.gov/pubmed/31831744
+ title: Experiment design driven FAIRification of omics data matrices, an exemplar
+- id: https://www.ncbi.nlm.nih.gov/pubmed/32109232
+ title: Semantic concept schema of the linear mixed model of experimental observations
repository: https://github.com/ISA-tools/stato
tags:
- statistics
tracker: https://github.com/ISA-tools/stato/issues
+usages:
+- description: struct (Statistics in R using Class-based Templates), Struct integrates with the STATistics Ontology to ensure consistent reporting and maximizes semantic interoperability
+ publications:
+ - id: https://www.ncbi.nlm.nih.gov/pubmed/33325493
+ title: 'struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond'
+ type: annotation
+ user: https://bioconductor.org/packages/release/bioc/html/struct.html
+- description: Scientific Evidence Code System (SEVCO) on the FEvIR platform. The FEvIR Platform includes many Builder Tools to create FHIR Resources without requiring expertise in FHIR or JSON, and Converter Tools to convert structured data to FHIR Resources
+ publications:
+ - id: https://www.ncbi.nlm.nih.gov/pubmed/33486066
+ title: 'Making science computable: Developing code systems for statistics, study design, and risk of bias'
+ type: annotation
+ user: https://fevir.net/resources/CodeSystem/27270#STATO:0000039
+- description: OBCS
+ publications:
+ - id: https://www.ncbi.nlm.nih.gov/pubmed/27627881
+ title: The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis
+ type: annotation
+ user: https://github.com/obcs/obcs
activity_status: active
---
diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld
index e3680681b..5d79ccf43 100644
--- a/registry/ontologies.jsonld
+++ b/registry/ontologies.jsonld
@@ -3283,9 +3283,9 @@
"id": "foodon",
"layout": "ontology_detail",
"license": {
- "label": "CC BY 3.0",
+ "label": "CC BY 4.0",
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
- "url": "http://creativecommons.org/licenses/by/3.0/"
+ "url": "http://creativecommons.org/licenses/by/4.0/"
},
"ontology_purl": "http://purl.obolibrary.org/obo/foodon.owl",
"preferredPrefix": "FOODON",
@@ -3314,7 +3314,39 @@
"food"
],
"title": "Food Ontology",
- "tracker": "https://github.com/FoodOntology/foodon/issues/"
+ "tracker": "https://github.com/FoodOntology/foodon/issues/",
+ "usages": [
+ {
+ "description": "FoodData Central nutrition database web portal provided by USDA Agricultural Research Service.",
+ "examples": [
+ {
+ "description": "An entry for 'Apples, fuji, with skin, raw' from the FoodData Central nutrition database which is annotated with the term FOODON:00002862.",
+ "url": "https://fdc.nal.usda.gov/fdc-app.html#/food-details/1750340/attributes"
+ }
+ ],
+ "user": "https://fdc.nal.usda.gov/"
+ },
+ {
+ "description": "FDA GenomeTrackr surveillance program for reporting foodborne pathogen biosamples.",
+ "examples": [
+ {
+ "description": "An entry from NCBI Biosample that describes a *Samonella enterica* sample extracted from Chicken and annotated with the term FOODON:03411457.",
+ "url": "https://www.ncbi.nlm.nih.gov/biosample/SAMN03455272"
+ }
+ ],
+ "user": "https://www.fda.gov/food/whole-genome-sequencing-wgs-program/genometrakr-network"
+ },
+ {
+ "description": "Wiki database consolidating over 30 global food composition databases.",
+ "examples": [
+ {
+ "description": "An entry from WikiFCD that describes Walnuts and is annotated with the term FOODON:03301364.",
+ "url": "https://wikifcd.wikibase.cloud/wiki/Item:Q568877"
+ }
+ ],
+ "user": "https://wikifcd.wikibase.cloud/wiki/Main_Page"
+ }
+ ]
},
{
"activity_status": "active",
@@ -5464,7 +5496,7 @@
}
],
"contact": {
- "email": "drsbello@gmail.com",
+ "email": "pheno@jax.org",
"github": "sbello",
"label": "Sue Bello",
"orcid": "0000-0003-4606-0597"
@@ -8780,12 +8812,57 @@
"ontology_purl": "http://purl.obolibrary.org/obo/stato.owl"
}
],
+ "publications": [
+ {
+ "id": "https://www.ncbi.nlm.nih.gov/pubmed/31831744",
+ "title": "Experiment design driven FAIRification of omics data matrices, an exemplar"
+ },
+ {
+ "id": "https://www.ncbi.nlm.nih.gov/pubmed/32109232",
+ "title": "Semantic concept schema of the linear mixed model of experimental observations"
+ }
+ ],
"repository": "https://github.com/ISA-tools/stato",
"tags": [
"statistics"
],
"title": "The Statistical Methods Ontology",
- "tracker": "https://github.com/ISA-tools/stato/issues"
+ "tracker": "https://github.com/ISA-tools/stato/issues",
+ "usages": [
+ {
+ "description": "struct (Statistics in R using Class-based Templates), Struct integrates with the STATistics Ontology to ensure consistent reporting and maximizes semantic interoperability",
+ "publications": [
+ {
+ "id": "https://www.ncbi.nlm.nih.gov/pubmed/33325493",
+ "title": "struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond"
+ }
+ ],
+ "type": "annotation",
+ "user": "https://bioconductor.org/packages/release/bioc/html/struct.html"
+ },
+ {
+ "description": "Scientific Evidence Code System (SEVCO) on the FEvIR platform. The FEvIR Platform includes many Builder Tools to create FHIR Resources without requiring expertise in FHIR or JSON, and Converter Tools to convert structured data to FHIR Resources",
+ "publications": [
+ {
+ "id": "https://www.ncbi.nlm.nih.gov/pubmed/33486066",
+ "title": "Making science computable: Developing code systems for statistics, study design, and risk of bias"
+ }
+ ],
+ "type": "annotation",
+ "user": "https://fevir.net/resources/CodeSystem/27270#STATO:0000039"
+ },
+ {
+ "description": "OBCS",
+ "publications": [
+ {
+ "id": "https://www.ncbi.nlm.nih.gov/pubmed/27627881",
+ "title": "The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis"
+ }
+ ],
+ "type": "annotation",
+ "user": "https://github.com/obcs/obcs"
+ }
+ ]
},
{
"activity_status": "active",
diff --git a/registry/ontologies.nt b/registry/ontologies.nt
index 677119049..2e29cef0b 100644
--- a/registry/ontologies.nt
+++ b/registry/ontologies.nt
@@ -7,7 +7,7 @@
"health" .
"https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/issues" .
"http://purl.obolibrary.org/obo/ado.owl" .
- _:Bea4a763ee89bc61d406cccd3af33bb81 .
+ _:B7291594c54adb04b1daae4c9e59266c2 .
.
.
"BFO" .
@@ -20,14 +20,14 @@
"https://groups.google.com/forum/#!forum/bfo-discuss" .
.
"http://purl.obolibrary.org/obo/bfo.owl" .
- _:B6637c45714cb844852ecf8e31f78024c .
+ _:Be8f886292c47af5fda3782ef604fec87 .
.
.
.
.
"CC BY 4.0" .
-_:Bea4a763ee89bc61d406cccd3af33bb81 "Alpha Tom Kodamullil" .
-_:Bea4a763ee89bc61d406cccd3af33bb81 "alpha.tom.kodamullil@scai.fraunhofer.de" .
+_:B7291594c54adb04b1daae4c9e59266c2 "Alpha Tom Kodamullil" .
+_:B7291594c54adb04b1daae4c9e59266c2 "alpha.tom.kodamullil@scai.fraunhofer.de" .
"http://purl.obolibrary.org/obo/ado.owl" .
"AfPO" .
"active" .
@@ -37,13 +37,13 @@ _:Bea4a763ee89bc61d406cccd3af33bb81 "alpha.tom.
"organisms" .
"https://github.com/h3abionet/afpo/issues" .
"http://purl.obolibrary.org/obo/afpo.owl" .
- _:B3d337ac82b25231d29e23bedfbad8511 .
+ _:Bd528d8de447c1be9475d202121d7f8cb .
.
.
.
.
-_:B3d337ac82b25231d29e23bedfbad8511 "Melek Chaouch" .
-_:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@msn.com" .
+_:Bd528d8de447c1be9475d202121d7f8cb "Melek Chaouch" .
+_:Bd528d8de447c1be9475d202121d7f8cb "mcmelek@msn.com" .
"The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" .
"AfPO (OWL edition)" .
"http://purl.obolibrary.org/obo/afpo.owl" .
@@ -78,7 +78,7 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
"agriculture" .
"https://github.com/AgriculturalSemantics/agro/issues/" .
"http://purl.obolibrary.org/obo/agro.owl" .
- _:B5027865ec9a0cd5f61f56e74277b2567 .
+ _:B03d15c264acc7e644c806619b787f823 .
.
.
"ENVO" .
@@ -99,7 +99,7 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
"environment" .
"https://github.com/EnvironmentOntology/envo/issues/" .
"http://purl.obolibrary.org/obo/envo.owl" .
- _:Bae7d5607bc6f4ecda85ddbe67499c42f .
+ _:Bbac9e6133b042174d4ae903a274b16bd .
.
.
.
@@ -120,12 +120,12 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
.
"A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" .
"Food Ontology" .
- .
+ .
.
"diet, metabolomics, and nutrition" .
"https://github.com/FoodOntology/foodon/issues/" .
"http://purl.obolibrary.org/obo/foodon.owl" .
- _:B3433b4f4def6de71a78f4b45d124f554 .
+ _:B320f83b39eb48c8b9ba40d49cd19ab9f .
.
.
.
@@ -148,7 +148,7 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
"GO" .
.
"http://purl.obolibrary.org/obo/go.owl" .
- _:Bb6f0831b1e5e391f529b91647786c304 .
+ _:B96a66d1b103b61223e7bc7805aecd7cf .
.
.
.
@@ -164,14 +164,14 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
.
"IAO" .
"active" .
- _:Bc86ad7c77a410f0eb3a057e0c62229b7 .
+ _:Beeb02db87ccc8de7d1b4716135dd3dc9 .
"An ontology of information entities." .
"Information Artifact Ontology" .
.
"information" .
"https://github.com/information-artifact-ontology/IAO/issues" .
"http://purl.obolibrary.org/obo/iao.owl" .
- _:B1806ea7a863a9337818668c947d6b479 .
+ _:Bca2e5b8aa61af031ee226fe7130bccbf .
.
.
.
@@ -187,7 +187,7 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
"https://github.com/obophenotype/ncbitaxon/issues" .
.
"http://purl.obolibrary.org/obo/ncbitaxon.owl" .
- _:B87929241f989e6477169bf7745b3276f .
+ _:Bfec9adc116c341c0fc5e806db5a366f8 .
.
.
.
@@ -198,7 +198,7 @@ _:B3d337ac82b25231d29e23bedfbad8511 "mcmelek@ms
"OBI" .
"active" .
"http://build.berkeleybop.org/job/build-obi/" .
- _:Bd2185d61900d908e571e8f3cd4bdd8c5 .
+ _:B4497bfcd704c4850e0c00e8b51ebdb84 .
"An integrated ontology for the description of life-science and clinical investigations" .
"Ontology for Biomedical Investigations" .