From 2d8ace11c026b6a2a36b0835ba10a27ded6980a2 Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Tue, 17 Dec 2024 15:39:57 +0000
Subject: [PATCH] Add JSON products to CL's description. (#2665)

* Add JSON products to CL's description.

Update CL's description to add the JSON version of the main, -basic, and
-base products.

Also remove the dependency to CHEBI, which is incorrect: CL does not
import CHEBI.

* Fix sort order of CL dependencies.
---
 ontology/cl.md | 34 ++++++++++++++++++++++++++++------
 1 file changed, 28 insertions(+), 6 deletions(-)

diff --git a/ontology/cl.md b/ontology/cl.md
index 007eeb8cb..d39430d47 100644
--- a/ontology/cl.md
+++ b/ontology/cl.md
@@ -9,9 +9,9 @@ contact:
   label: Alexander Diehl
   orcid: 0000-0001-9990-8331
 dependencies:
-- id: chebi
 - id: go
 - id: ncbitaxon
+- id: omo
 - id: pato
 - id: pr
 - id: ro
@@ -33,25 +33,47 @@ products:
   format: owl-rdf/xml
   is_canonical: true
   uses:
-  - uberon
-  - chebi
   - go
-  - pr
-  - pato
   - ncbitaxon
+  - omo
+  - pato
+  - pr
   - ro
+  - uberon
 - id: cl.obo
   title: CL obo format edition
   derived_from: cl.owl
   description: Complete ontology, plus inter-ontology axioms, and imports modules merged in
   format: obo
-- id: cl/cl-basic.obo
+- id: cl.json
+  title: CL OBOGraph-JSON format edition
+  derived_from: cl.owl
+  description: Complete ontology, plus inter-ontology axioms, and imports modules merged in
+  format: json
+- id: cl/cl-basic.owl
   title: Basic CL
   description: Basic version, no inter-ontology axioms
+  format: owl-rdf/xml
+- id: cl/cl-basic.obo
+  title: Basic CL (OBO version)
+  description: Basic version, no inter-ontology axioms
   format: obo
+- id: cl/cl-basic.json
+  title: Basic CL (OBOGraph-JSON version)
+  description: Basic version, no inter-ontology axioms
+  format: json
 - id: cl/cl-base.owl
   title: CL base module
   description: complete CL but with no imports or external axioms
+  format: owl-rdf/xml
+- id: cl/cl-base.obo
+  title: CL base module (OBO version)
+  description: complete CL but with no imports or external axioms
+  format: obo
+- id: cl/cl-base.json
+  title: CL base module (OBOGraph-JSON version)
+  description: complete CL but with no imports or external axioms
+  format: json
 publications:
 - id: https://www.ncbi.nlm.nih.gov/pubmed/27377652
   title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'