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Ensure ontology subsets are fully documented #466

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cmungall opened this issue Aug 22, 2017 · 3 comments
Open

Ensure ontology subsets are fully documented #466

cmungall opened this issue Aug 22, 2017 · 3 comments
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documentation Issues related to documentation presented on the website or relevant to Foundry-provided tools ontology metadata Issues related to ontology metadata

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@cmungall
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cmungall commented Aug 22, 2017

We should have concise but informative documentation on the different subset products offered by the different ontologies. This could be in the yaml or in the dc:description of the subset or both.

Examples: go-basic, uberon subsets

As far as possible this documentation should rely on a shared terminology, TBD here, examples include:

  • class subset: a subset based on a set of classes of interest. E.g. classic GO "slims"
    • by domain of interest
    • by level of specificity
    • editorial criteria, e.g. heavily vetted (obi core; chebi 3-stars)
  • property subset: a subset based on a set of OPs of interest, e.g. isa/partof (with all axioms that refer to OPs not in subset removed)
  • axiom type or expressivity subset, e.g. obo basic, classic OWL profiles

Related discussion: ontodev/robot#183 (comment)

@nlharris
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Has this been done? If not, and it's still relevant, can it be assigned to someone else?

@nlharris nlharris added the documentation Issues related to documentation presented on the website or relevant to Foundry-provided tools label Jul 14, 2020
@nlharris
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is this still needed?

@matentzn
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Low priority, nice to have. This requires real manual labour; I personally think it's not worth it, but we could encourage it better for new ontologies moving forward.

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Labels
documentation Issues related to documentation presented on the website or relevant to Foundry-provided tools ontology metadata Issues related to ontology metadata
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