diff --git a/ontology/agro.md b/ontology/agro.md index a43cefaae..fdaa4feb0 100644 --- a/ontology/agro.md +++ b/ontology/agro.md @@ -2,10 +2,6 @@ layout: ontology_detail id: agro title: Agronomy Ontology -build: - checkout: git clone https://github.com/AgriculturalSemantics/agro.git - path: . - system: git contact: email: m.a.laporte@cgiar.org github: marieALaporte @@ -29,9 +25,6 @@ dependencies: description: Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments domain: agriculture homepage: https://github.com/AgriculturalSemantics/agro -jobs: -- id: https://travis-ci.org/AgriculturalSemantics/agro - type: travis-ci license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/ceph.md b/ontology/ceph.md index c4654bd13..c77a099d3 100644 --- a/ontology/ceph.md +++ b/ontology/ceph.md @@ -2,11 +2,6 @@ layout: ontology_detail id: ceph title: Cephalopod Ontology -build: - checkout: git clone https://github.com/obophenotype/cephalopod-ontology.git - method: vcs - path: src/ontology - system: git contact: email: cjmungall@lbl.gov github: cmungall @@ -15,9 +10,6 @@ contact: description: An anatomical and developmental ontology for cephalopods domain: anatomy and development homepage: https://github.com/obophenotype/cephalopod-ontology -jobs: -- id: https://travis-ci.org/obophenotype/cephalopod-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/chiro.md b/ontology/chiro.md index f6a3475e1..2c9a4926b 100644 --- a/ontology/chiro.md +++ b/ontology/chiro.md @@ -2,10 +2,6 @@ layout: ontology_detail id: chiro title: CHEBI Integrated Role Ontology -build: - checkout: git clone https://github.com/obophenotype/chiro.git - path: . - system: git contact: email: vasilevs@ohsu.edu github: nicolevasilevsky @@ -22,9 +18,6 @@ dependencies: description: CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes. domain: chemistry and biochemistry homepage: https://github.com/obophenotype/chiro -jobs: -- id: https://travis-ci.org/obophenotype/chiro - type: travis-ci license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/cl.md b/ontology/cl.md index 0ccc27ae0..60fa074ed 100644 --- a/ontology/cl.md +++ b/ontology/cl.md @@ -2,12 +2,6 @@ layout: ontology_detail id: cl title: Cell Ontology -build: - checkout: git clone https://github.com/obophenotype/cell-ontology.git - email_cc: cl_edit@googlegroups.com - infallible: 1 - method: vcs - system: git canonical: cl.owl contact: email: addiehl@buffalo.edu @@ -26,10 +20,6 @@ depicted_by: /images/CL-logo.jpg description: The Cell Ontology is a structured controlled vocabulary for cell types in animals. domain: anatomy and development homepage: https://obophenotype.github.io/cell-ontology/ -integration_server: http://build.berkeleybop.org/job/build-cl/ -jobs: -- id: https://travis-ci.org/obophenotype/cell-ontology - type: travis-ci label: Cell Ontology license: label: CC BY 4.0 diff --git a/ontology/cteno.md b/ontology/cteno.md index 8de158577..7f301289e 100644 --- a/ontology/cteno.md +++ b/ontology/cteno.md @@ -2,11 +2,6 @@ layout: ontology_detail id: cteno title: Ctenophore Ontology -build: - checkout: git clone https://github.com/obophenotype/ctenophore-ontology.git - method: vcs - path: . - system: git contact: email: cjmungall@lbl.gov github: cmungall @@ -18,9 +13,6 @@ dependencies: description: An anatomical and developmental ontology for ctenophores (Comb Jellies) domain: anatomy and development homepage: https://github.com/obophenotype/ctenophore-ontology -jobs: -- id: https://travis-ci.org/obophenotype/ctenophore-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/duo.md b/ontology/duo.md index 71bf1d9b7..6626f6fa2 100644 --- a/ontology/duo.md +++ b/ontology/duo.md @@ -2,10 +2,6 @@ layout: ontology_detail id: duo title: Data Use Ontology -build: - checkout: git clone https://github.com/EBISPOT/duo.git - path: . - system: git contact: email: mcourtot@gmail.com github: mcourtot @@ -17,9 +13,6 @@ dependencies: description: DUO is an ontology which represent data use conditions. domain: information homepage: https://github.com/EBISPOT/DUO -jobs: -- id: https://travis-ci.org/EBISPOT/DUO - type: travis-ci license: label: CC BY 4.0 url: http://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/eco.md b/ontology/eco.md index 2ea385b10..9d69a089e 100644 --- a/ontology/eco.md +++ b/ontology/eco.md @@ -2,11 +2,6 @@ layout: ontology_detail id: eco title: Evidence ontology -build: - infallible: 1 - method: obo2owl - notes: switch to vcs - source_url: https://raw.githubusercontent.com/evidenceontology/evidenceontology/master/eco.obo contact: email: mgiglio@som.umaryland.edu github: mgiglio99 @@ -19,9 +14,6 @@ funded_by: - id: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400 title: NSF ABI-1458400 homepage: https://www.evidenceontology.org -jobs: -- id: https://travis-ci.org/evidenceontology/evidenceontology - type: travis-ci license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/ecocore.md b/ontology/ecocore.md index 9256a3144..0c139af5c 100644 --- a/ontology/ecocore.md +++ b/ontology/ecocore.md @@ -2,10 +2,6 @@ layout: ontology_detail id: ecocore title: An ontology of core ecological entities -build: - checkout: git clone https://github.com/EcologicalSemantics/ecocore.git - path: . - system: git contact: email: p.buttigieg@gmail.com github: pbuttigieg @@ -25,9 +21,6 @@ dependencies: description: Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms. domain: environment homepage: https://github.com/EcologicalSemantics/ecocore -jobs: -- id: https://travis-ci.org/EcologicalSemantics/ecocore - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/ecto.md b/ontology/ecto.md index d6b16bb1f..6665736c2 100644 --- a/ontology/ecto.md +++ b/ontology/ecto.md @@ -2,10 +2,6 @@ layout: ontology_detail id: ecto title: Environmental conditions, treatments and exposures ontology -build: - checkout: git clone https://github.com/EnvironmentOntology/environmental-exposure-ontology.git - path: . - system: git contact: email: annethessen@gmail.com github: diatomsRcool @@ -29,9 +25,6 @@ depicted_by: https://raw.githubusercontent.com/jmcmurry/closed-illustrations/mas description: ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology). domain: environment homepage: https://github.com/EnvironmentOntology/environmental-exposure-ontology -jobs: -- id: https://travis-ci.org/EnvironmentOntology/environmental-exposure-ontology - type: travis-ci license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/envo.md b/ontology/envo.md index 99cacc2fe..72b87d218 100644 --- a/ontology/envo.md +++ b/ontology/envo.md @@ -2,13 +2,6 @@ layout: ontology_detail id: envo title: Environment Ontology -build: - checkout: git clone https://github.com/EnvironmentOntology/envo.git - email_cc: cjmungall@lbl.gov - infallible: 1 - method: vcs - path: . - system: git contact: email: pier.buttigieg@awi.de github: pbuttigieg @@ -27,9 +20,6 @@ depicted_by: /images/envo.png description: An ontology of environmental systems, components, and processes. domain: environment homepage: http://environmentontology.org/ -jobs: -- id: https://github.com/EnvironmentOntology/envo/blob/master/.github/workflows/qc.yml - type: github-action license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/fovt.md b/ontology/fovt.md index 445dd739d..e3bc4a2e3 100644 --- a/ontology/fovt.md +++ b/ontology/fovt.md @@ -2,10 +2,6 @@ layout: ontology_detail id: fovt title: FuTRES Ontology of Vertebrate Traits -build: - checkout: git clone https://github.com/futres/fovt.git - path: . - system: git contact: email: meghan.balk@gmail.com github: megbalk @@ -23,9 +19,6 @@ dependencies: description: FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA). domain: phenotype homepage: https://github.com/futres/fovt -jobs: -- id: https://travis-ci.org/futres/fovt - type: travis-ci license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/hp.md b/ontology/hp.md index 6bcf282d2..acc9031ec 100644 --- a/ontology/hp.md +++ b/ontology/hp.md @@ -9,11 +9,6 @@ browsers: - title: Monarch Phenotype Page label: Monarch url: http://monarchinitiative.org/phenotype/HP:0000118 -build: - infallible: 1 - method: archive - path: archive/hp - source_url: http://compbio.charite.de/hudson/job/hpo/lastSuccessfulBuild/artifact/*zip*/archive.zip contact: email: dr.sebastian.koehler@gmail.com github: drseb @@ -23,9 +18,6 @@ depicted_by: https://raw.githubusercontent.com/obophenotype/human-phenotype-onto description: A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease. domain: phenotype homepage: http://www.human-phenotype-ontology.org/ -jobs: -- id: https://travis-ci.org/obophenotype/human-phenotype-ontology - type: travis-ci license: label: hpo url: https://hpo.jax.org/app/license diff --git a/ontology/hsapdv.md b/ontology/hsapdv.md index 5a8d36325..03b2ab6f5 100644 --- a/ontology/hsapdv.md +++ b/ontology/hsapdv.md @@ -2,10 +2,6 @@ layout: ontology_detail id: hsapdv title: Human Developmental Stages -build: - infallible: 1 - method: obo2owl - source_url: https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/hsapdv/hsapdv.obo contact: email: frederic.bastian@unil.ch github: fbastian diff --git a/ontology/mco.md b/ontology/mco.md index 6cf15786b..d1522d462 100644 --- a/ontology/mco.md +++ b/ontology/mco.md @@ -2,10 +2,6 @@ layout: ontology_detail id: mco title: Microbial Conditions Ontology -build: - checkout: git clone https://github.com/microbial-conditions-ontology/microbial-conditions-ontology.git - path: . - system: git contact: email: citlalli.mejiaalmonte@gmail.com github: citmejia @@ -29,9 +25,6 @@ dependencies: description: Microbial Conditions Ontology is an ontology... domain: investigations homepage: https://github.com/microbial-conditions-ontology/microbial-conditions-ontology -jobs: -- id: https://travis-ci.org/microbial-conditions-ontology/microbial-conditions-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/mp.md b/ontology/mp.md index fa2b71e91..9393f5fcb 100644 --- a/ontology/mp.md +++ b/ontology/mp.md @@ -12,10 +12,6 @@ browsers: - title: Monarch Phenotype Page label: Monarch url: http://monarchinitiative.org/phenotype/MP:0000001 -build: - checkout: git clone https://github.com/mgijax/mammalian-phenotype-ontology.git - path: . - system: git contact: email: drsbello@gmail.com github: sbello @@ -24,9 +20,6 @@ contact: description: Standard terms for annotating mammalian phenotypic data. domain: phenotype homepage: http://www.informatics.jax.org/searches/MP_form.shtml -jobs: -- id: http://build.berkeleybop.org/job/build-mp-edit - type: DryRunBuild license: label: CC BY 4.0 url: http://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/ncbitaxon.md b/ontology/ncbitaxon.md index 715b33b67..707efde5b 100644 --- a/ontology/ncbitaxon.md +++ b/ontology/ncbitaxon.md @@ -6,11 +6,6 @@ browsers: - title: NCBI Taxonomy Browser label: NCBI url: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi -build: - infallible: 1 - method: archive - path: archive - source_url: http://build.berkeleybop.org/job/build-ncbitaxon/lastSuccessfulBuild/artifact/*zip*/archive.zip contact: email: frederic.bastian@unil.ch github: fbastian @@ -19,9 +14,6 @@ contact: description: An ontology representation of the NCBI organismal taxonomy domain: organisms homepage: https://github.com/obophenotype/ncbitaxon -jobs: -- id: http://build.berkeleybop.org/job/build-ncbitaxon/ - type: ReleaseBuild license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/oba.md b/ontology/oba.md index 43fd9c1d3..b8d00411d 100644 --- a/ontology/oba.md +++ b/ontology/oba.md @@ -2,11 +2,6 @@ layout: ontology_detail id: oba title: Ontology of Biological Attributes -build: - checkout: git clone https://github.com/obophenotype/bio-attribute-ontology.git - method: vcs - path: . - system: git contact: email: cjmungall@lbl.gov github: cmungall @@ -15,9 +10,6 @@ contact: description: A collection of biological attributes (traits) covering all kingdoms of life. domain: phenotype homepage: https://github.com/obophenotype/bio-attribute-ontology -jobs: -- id: https://travis-ci.org/obophenotype/bio-attribute-ontology - type: travis-ci license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/pato.md b/ontology/pato.md index 23a9dd141..2293aaa5a 100644 --- a/ontology/pato.md +++ b/ontology/pato.md @@ -6,10 +6,6 @@ browsers: - title: BioPortal Ontology Browser label: BioPortal url: https://bioportal.bioontology.org/ontologies/PATO -build: - infallible: 1 - method: obo2owl - source_url: https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo contact: email: g.gkoutos@gmail.com github: gkoutos @@ -19,9 +15,6 @@ description: An ontology of phenotypic qualities (properties, attributes or char domain: phenotype homepage: https://github.com/pato-ontology/pato/ in_foundry_order: 1 -jobs: -- id: https://travis-ci.org/pato-ontology/pato - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/pco.md b/ontology/pco.md index 0ff03810b..6b9407705 100644 --- a/ontology/pco.md +++ b/ontology/pco.md @@ -2,10 +2,6 @@ layout: ontology_detail id: pco title: Population and Community Ontology -build: - checkout: git clone https://github.com/PopulationAndCommunityOntology/pco.git - path: . - system: git contact: email: rlwalls2008@gmail.com github: ramonawalls @@ -23,9 +19,6 @@ dependencies: description: An ontology about groups of interacting organisms such as populations and communities domain: environment homepage: https://github.com/PopulationAndCommunityOntology/pco -jobs: -- id: https://travis-ci.org/PopulationAndCommunityOntology/pco - type: travis-ci license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/phipo.md b/ontology/phipo.md index 2c99508cd..84a20d5cb 100644 --- a/ontology/phipo.md +++ b/ontology/phipo.md @@ -2,10 +2,6 @@ layout: ontology_detail id: phipo title: Pathogen Host Interaction Phenotype Ontology -build: - checkout: git clone https://github.com/PHI-base/phipo.git - path: . - system: git contact: email: alayne.cuzick@rothamsted.ac.uk github: CuzickA @@ -16,9 +12,6 @@ dependencies: description: PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions. domain: phenotype homepage: https://github.com/PHI-base/phipo -jobs: -- id: https://travis-ci.org/PHI-base/phipo - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/plana.md b/ontology/plana.md index b85ecd87e..8c6841e8f 100644 --- a/ontology/plana.md +++ b/ontology/plana.md @@ -2,10 +2,6 @@ layout: ontology_detail id: plana title: planaria-ontology -build: - checkout: git clone https://github.com/obophenotype/planaria-ontology.git - path: . - system: git contact: email: smr@stowers.org github: srobb1 @@ -17,9 +13,6 @@ dependencies: description: PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes. domain: anatomy and development homepage: https://github.com/obophenotype/planaria-ontology -jobs: -- id: https://travis-ci.org/obophenotype/planaria-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/planp.md b/ontology/planp.md index f56bd0c8c..46e41c676 100644 --- a/ontology/planp.md +++ b/ontology/planp.md @@ -2,10 +2,6 @@ layout: ontology_detail id: planp title: Planarian Phenotype Ontology -build: - checkout: git clone https://github.com/obophenotype/planarian-phenotype-ontology.git - path: . - system: git contact: email: smr@stowers.org github: srobb1 @@ -19,9 +15,6 @@ dependencies: description: Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. domain: phenotype homepage: https://github.com/obophenotype/planarian-phenotype-ontology -jobs: -- id: https://travis-ci.org/obophenotype/planarian-phenotype-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/po.md b/ontology/po.md index 2c21e7781..7438a2bc2 100644 --- a/ontology/po.md +++ b/ontology/po.md @@ -6,11 +6,6 @@ browsers: - title: Planteome browser label: Planteome url: http://browser.planteome.org/amigo -build: - checkout: git clone https://github.com/Planteome/plant-ontology.git - infallible: 1 - method: vcs - system: git contact: email: jaiswalp@science.oregonstate.edu github: jaiswalp @@ -21,9 +16,6 @@ description: The Plant Ontology is a structured vocabulary and database resource domain: anatomy and development homepage: http://browser.planteome.org/amigo in_foundry_order: 1 -jobs: -- id: https://travis-ci.org/Planteome/plant-ontology - type: travis-ci license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/poro.md b/ontology/poro.md index 10d770eb8..41e0bf358 100644 --- a/ontology/poro.md +++ b/ontology/poro.md @@ -2,12 +2,6 @@ layout: ontology_detail id: poro title: Porifera Ontology -build: - checkout: git clone https://github.com/obophenotype/porifera-ontology.git - infallible: 1 - method: vcs - path: . - system: git contact: email: robert.thacker@stonybrook.edu github: bobthacker @@ -19,9 +13,6 @@ dependencies: description: An ontology covering the anatomy of the taxon Porifera (sponges) domain: anatomy and development homepage: https://github.com/obophenotype/porifera-ontology -jobs: -- id: https://travis-ci.org/obophenotype/porifera-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/pso.md b/ontology/pso.md index b442224c2..3f9ec3ad2 100644 --- a/ontology/pso.md +++ b/ontology/pso.md @@ -2,10 +2,6 @@ layout: ontology_detail id: pso title: Plant Stress Ontology -build: - checkout: git clone https://github.com/Planteome/plant-stress-ontology.git - path: . - system: git contact: email: cooperl@oregonstate.edu github: cooperl09 @@ -16,9 +12,6 @@ dependencies: description: The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter. domain: agriculture homepage: https://github.com/Planteome/plant-stress-ontology -jobs: -- id: https://travis-ci.org/Planteome/plant-stress-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/rbo.md b/ontology/rbo.md index cf3b66361..e7bf42c81 100644 --- a/ontology/rbo.md +++ b/ontology/rbo.md @@ -2,10 +2,6 @@ layout: ontology_detail id: rbo title: Radiation Biology Ontology -build: - checkout: git clone https://github.com/Radiobiology-Informatics-Consortium/RBO.git - path: . - system: git contact: email: daniel.c.berrios@nasa.gov github: DanBerrios @@ -22,9 +18,6 @@ dependencies: description: RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. domain: environment homepage: https://github.com/Radiobiology-Informatics-Consortium/RBO -jobs: -- id: https://travis-ci.org/DanBerrios/RBO - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/ro.md b/ontology/ro.md index 097d10f08..d53e921af 100644 --- a/ontology/ro.md +++ b/ontology/ro.md @@ -2,11 +2,6 @@ layout: ontology_detail id: ro title: Relation Ontology -build: - checkout: git clone https://github.com/oborel/obo-relations.git - infallible: 1 - method: vcs - system: git canonical: ro.owl contact: email: cjmungall@lbl.gov @@ -17,9 +12,6 @@ description: Relationship types shared across multiple ontologies documentation: https://oborel.github.io/obo-relations/ domain: upper homepage: https://oborel.github.io/ -jobs: -- id: https://travis-ci.org/oborel/obo-relations - type: travis-ci license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/taxrank.md b/ontology/taxrank.md index 9769a2d12..bc7000cb5 100644 --- a/ontology/taxrank.md +++ b/ontology/taxrank.md @@ -2,10 +2,6 @@ layout: ontology_detail id: taxrank title: Taxonomic rank vocabulary -build: - checkout: git clone https://github.com/phenoscape/taxrank.git - path: . - system: git contact: email: balhoff@renci.org github: balhoff @@ -14,9 +10,6 @@ contact: description: A vocabulary of taxonomic ranks (species, family, phylum, etc) domain: organisms homepage: https://github.com/phenoscape/taxrank -jobs: -- id: https://travis-ci.org/phenoscape/taxrank - type: travis-ci license: label: CC0 1.0 url: http://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/to.md b/ontology/to.md index 64e6098ee..e526e7538 100644 --- a/ontology/to.md +++ b/ontology/to.md @@ -6,12 +6,6 @@ browsers: - title: Planteome browser label: Planteome url: http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab -build: - checkout: git clone https://github.com/Planteome/plant-trait-ontology.git - infallible: 1 - method: vcs - path: . - system: git contact: email: jaiswalp@science.oregonstate.edu github: jaiswalp @@ -21,9 +15,6 @@ depicted_by: http://planteome.org/sites/default/files/garland_logo.PNG description: A controlled vocabulary to describe phenotypic traits in plants. domain: phenotype homepage: http://browser.planteome.org/amigo -jobs: -- id: https://travis-ci.org/Planteome/plant-trait-ontology - type: travis-ci license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/upa.md b/ontology/upa.md index 93158894e..74e280fb9 100644 --- a/ontology/upa.md +++ b/ontology/upa.md @@ -2,10 +2,6 @@ layout: ontology_detail id: upa title: Unipathway -build: - checkout: git clone https://github.com/geneontology/unipathway.git - path: . - system: git contact: email: Anne.Morgat@sib.swiss github: amorgat @@ -16,9 +12,6 @@ dependencies: description: A manually curated resource for the representation and annotation of metabolic pathways domain: biological systems homepage: https://github.com/geneontology/unipathway -jobs: -- id: https://travis-ci.org/geneontology/unipathway - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/xpo.md b/ontology/xpo.md index bbccfe508..960a42b5b 100644 --- a/ontology/xpo.md +++ b/ontology/xpo.md @@ -2,10 +2,6 @@ layout: ontology_detail id: xpo title: Xenopus Phenotype Ontology -build: - checkout: git clone https://github.com/obophenotype/xenopus-phenotype-ontology.git - path: . - system: git contact: email: Erik.Segerdell@cchmc.org github: seger @@ -23,9 +19,6 @@ dependencies: description: XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis. domain: phenotype homepage: https://github.com/obophenotype/xenopus-phenotype-ontology -jobs: -- id: https://travis-ci.org/obophenotype/xenopus-phenotype-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/zp.md b/ontology/zp.md index 4de4dab2a..91e75a689 100644 --- a/ontology/zp.md +++ b/ontology/zp.md @@ -2,10 +2,6 @@ layout: ontology_detail id: zp title: Zebrafish Phenotype Ontology -build: - checkout: git clone https://github.com/obophenotype/zebrafish-phenotype-ontology.git - path: . - system: git contact: email: ybradford@zfin.org github: ybradford @@ -22,9 +18,6 @@ dependencies: description: The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism. domain: phenotype homepage: https://github.com/obophenotype/zebrafish-phenotype-ontology -jobs: -- id: https://travis-ci.org/obophenotype/zebrafish-phenotype-ontology - type: travis-ci license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/util/schema/registry_schema.json b/util/schema/registry_schema.json index a571eef34..fe00486fe 100644 --- a/util/schema/registry_schema.json +++ b/util/schema/registry_schema.json @@ -179,9 +179,6 @@ "type": "boolean", "default": false }, - "jobs": { - "suggest": false - }, "label": { "suggest": false },