diff --git a/ontology/cl.md b/ontology/cl.md index 070362d6c..007eeb8cb 100644 --- a/ontology/cl.md +++ b/ontology/cl.md @@ -84,6 +84,15 @@ usages: title: 'The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.' type: annotation user: https://hubmapconsortium.org/ +- description: The single-cell transcriptomics platform CZ CELLxGENE uses CL to annotate all cell types. All datasets on CellXGene are annotated according to a standard schema that specifies the use of CL to record Cell Type. + examples: + - description: A CELLxGENE Cell Guide entry for 'luminal adaptive secretory precursor cell of mammary gland', which includes the CL ID (CL:4033057), CL definition and a visualizer of CL hierarchy + url: https://cellxgene.cziscience.com/cellguide/CL:4033057 + publications: + - id: https://doi.org/10.1101/2021.04.05.438318 + title: 'CELLxGENE: a performant, scalable exploration platform for high dimensional sparse matrices' + type: annotation + user: https://cellxgene.cziscience.com/ - description: The Human Cell Atlas (HCA) is an international group of researchers using a combination of these new technologies to create cellular reference maps. The HCA use CL to annotate cells in their reference maps. examples: - description: HCA collection studies that are related B cell (CL:0000236) that is filtered through CL annotation @@ -149,6 +158,10 @@ Uberon and various phenotype ontologies. The following are some applications of the cell ontology along with their publications: +**CZ CELLxGENE** + +CZI Single-Cell Biology Program, Shibla Abdulla, Brian Aevermann, Pedro Assis, Seve Badajoz, Sidney M. Bell, Emanuele Bezzi, et al. 2023. “CZ CELL×GENE Discover: A Single-Cell Data Platform for Scalable Exploration, Analysis and Modeling of Aggregated Data.” bioRxiv. [doi:10.1101/2023.10.30.563174](https://doi.org/10.1101/2023.10.30.563174). + **HuBMAP** HuBMAP Consortium (2019) The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nature, 574, 187–192