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Tutorial bug report (mainly download failure from osf) #361

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JizeZhangCS opened this issue Nov 12, 2024 · 0 comments
Open

Tutorial bug report (mainly download failure from osf) #361

JizeZhangCS opened this issue Nov 12, 2024 · 0 comments

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@JizeZhangCS
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  1. osl install instructions, https://raw.githubusercontent.com/OHBA-analysis/osl/main/envs/linux-full.yml, conda would stuck at solving dependencies; remove the version limit for pip, vtk and pyvista is recommended, as directly running conda install python=3.8.16 pip=23.3.1 vtk=9.1.0=*osmesa* pyvista=0.38.5 would also lead to stucking;
  2. source-recon-coreg.ipynb, the first code block, line 2, sys.command is not a valid function in python. please use os.system / subprocess.run() / ! trick in ipynb instead;
  3. source-recon-coreg.ipynb, the first code block, osf -p zxb6c fetch SourceRecon/data/notts_2subjects.zip would fail to download anything from osf;
  4. source-recon_subject.ipynb, the first code block, osf -p zxb6c fetch SourceRecon/data/wake_hen.zip would fail to download anything from osf;
  5. source-recon_batch.ipynb, the first code block, osf -p zxb6c fetch SourceRecon/data/wake_hen_group_raw.zip would fail to download anything from osf
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