From 2982e9c6d77097f8a45e106ae8e4af5831a89bfa Mon Sep 17 00:00:00 2001 From: Jamie Gilbert Date: Tue, 28 May 2024 12:28:46 -0700 Subject: [PATCH 1/7] Update cohort-diagnostics-main.R Get table names faile when schema specified --- R/cohort-diagnostics-main.R | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/R/cohort-diagnostics-main.R b/R/cohort-diagnostics-main.R index d7a14e1f..3cd9056a 100644 --- a/R/cohort-diagnostics-main.R +++ b/R/cohort-diagnostics-main.R @@ -20,14 +20,16 @@ tables <- connectionHandler$queryDb(sql, schema = schema) |> dplyr::pull("tableName") |> tolower() - return(tables) - } - - return( - DatabaseConnector::getTableNames(connectionHandler$getConnection(), + + } else if (connectionHandler$dbms() != "sqlite") { + tables <- DatabaseConnector::getTableNames(connectionHandler$getConnection(), databaseSchema = schema) |> tolower() - ) + } else { + tables <- DatabaseConnector::getTableNames(connectionHandler$getConnection()) |> + tolower() + } + return(tables) } From 941856c40db60c8c48d9d96a243909923aa78cc4 Mon Sep 17 00:00:00 2001 From: jgilber2 Date: Mon, 24 Jun 2024 08:30:51 -0700 Subject: [PATCH 2/7] News and description updates --- DESCRIPTION | 2 +- NEWS.md | 4 ++++ 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 39e7a303..7f01900e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: OhdsiShinyModules Type: Package Title: Repository of Shiny Modules for OHDSI Result Viewers -Version: 2.1.4 +Version: 2.1.5 Author: Jenna Reps Maintainer: Jenna Reps Description: Install this package to access useful shiny modules for building shiny apps to explore results using the OHDSI tools . diff --git a/NEWS.md b/NEWS.md index 22e484a7..a0b6fc9a 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +OhdsiShinyModules v2.1.5 +======================== +Fixed issue in DatabaseConnector check for pooled connections of sqlite databases on cohort diagnotiscs load + OhdsiShinyModules v2.1.4 ======================== Fixed missing call to dplyr in CohortDiagnostics load up From 7523c834f86aa8ddde92d1893a5ae323f2c9c67c Mon Sep 17 00:00:00 2001 From: jgilber2 Date: Mon, 24 Jun 2024 09:42:16 -0700 Subject: [PATCH 3/7] removed circeR from remotes --- DESCRIPTION | 1 - 1 file changed, 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 7f01900e..37cb355f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -54,6 +54,5 @@ Suggests: testthat, withr Remotes: - ohdsi/CirceR, ohdsi/ResultModelManager RoxygenNote: 7.3.1 From c51451b0bc6d324132f4636a2a6fd730ddeeeb33 Mon Sep 17 00:00:00 2001 From: jgilber2 Date: Mon, 15 Jul 2024 07:51:22 -0700 Subject: [PATCH 4/7] Fixed broken package docs --- R/cohort-diagnostics-main-ui.R | 2 +- R/cohort-diagnostics-main.R | 2 ++ R/cohort-diagnostics-orphanConcepts.R | 2 +- R/components-data-viewer.R | 4 +-- R/components-largeTableViewer.R | 4 +++ R/datasources-main.R | 6 ++-- R/helpers-componentsCreateCustomColDefList.R | 4 +-- R/phevaluator-main.R | 7 ++--- _pkgdown.yml | 31 +++++++++++++------- docs/index.html | 2 +- docs/pkgdown.yml | 4 +-- 11 files changed, 42 insertions(+), 26 deletions(-) diff --git a/R/cohort-diagnostics-main-ui.R b/R/cohort-diagnostics-main-ui.R index b4291c3c..8552922f 100644 --- a/R/cohort-diagnostics-main-ui.R +++ b/R/cohort-diagnostics-main-ui.R @@ -145,7 +145,7 @@ cdUiControls <- function(ns) { #' #' @return #' string location of the description helper file -#' +#' @family {CohortDiagnostics} #' @export cohortDiagnosticsHelperFile <- function() { fileLoc <- system.file('cohort-diagnostics-www', "cohort-diagnostics.html", package = utils::packageName()) diff --git a/R/cohort-diagnostics-main.R b/R/cohort-diagnostics-main.R index 3cd9056a..5541d7de 100644 --- a/R/cohort-diagnostics-main.R +++ b/R/cohort-diagnostics-main.R @@ -412,6 +412,8 @@ getResultsTemporalTimeRef <- function(dataSource) { #' @param connectionHandler ResultModelManager ConnectionHander instance #' @param resultDatabaseSettings results database settings #' @param dataSource dataSource optionally created with createCdDatabaseDataSource +#' +#' @family {CohortDiagnostics} #' @export cohortDiagnosticsServer <- function(id, connectionHandler, diff --git a/R/cohort-diagnostics-orphanConcepts.R b/R/cohort-diagnostics-orphanConcepts.R index d539812b..a50bf0db 100644 --- a/R/cohort-diagnostics-orphanConcepts.R +++ b/R/cohort-diagnostics-orphanConcepts.R @@ -17,7 +17,7 @@ #' Orphan Concepts View #' @description #' Use for customizing UI -#' +#' @family {CohortDiagnostics} #' @param id Namespace Id - use namespaced id ns("orphanConcepts") inside diagnosticsExplorer module #' @export orpahanConceptsView <- function(id) { diff --git a/R/components-data-viewer.R b/R/components-data-viewer.R index e9a52f15..8ad40662 100644 --- a/R/components-data-viewer.R +++ b/R/components-data-viewer.R @@ -11,7 +11,7 @@ #' @param downloadedFileName string, desired name of downloaded data file. can use the name from the module that is being used #' #' @return shiny module UI -#' +#' @family {Utils} resultTableViewer <- function( id = "result-table", downloadedFileName = NULL @@ -158,7 +158,7 @@ ohdsiReactableTheme <- reactable::reactableTheme( #' @param groupBy The columns to group by #' #' @return shiny module server -#' +#' @family {Utils} resultTableServer <- function( id, #string df, #data.frame diff --git a/R/components-largeTableViewer.R b/R/components-largeTableViewer.R index b89ce9fa..0e1c8220 100644 --- a/R/components-largeTableViewer.R +++ b/R/components-largeTableViewer.R @@ -19,6 +19,7 @@ #' @field countQuery count query string (should match query). Can be auto generated with sub query (default) but #' this will likely result in slow results #' @field connectionHandler ResultModelManager connection handler to execute query inside +#' @family {LargeTables} LargeDataTable <- R6::R6Class( classname = "LargeDataTable", public = list( @@ -102,6 +103,7 @@ LargeDataTable <- R6::R6Class( #' @param baseQuery base sql query #' @param countQuery count query string (should match query). Can be auto generated with sub query #' (default) but this will likely result in slow results +#' @family {LargeTables} createLargeSqlQueryDt <- function(connectionHandler = NULL, connectionDetails = NULL, baseQuery, @@ -126,6 +128,7 @@ createLargeSqlQueryDt <- function(connectionHandler = NULL, #' @param pageSizeChoices numeric selection options for pages #' @param selectedPageSize numeric selection options for pages #' @param fullDownloads allow download button of full dataset from query +#' @family {LargeTables} largeTableView <- function(id, pageSizeChoices = c(10,25,50,100), selectedPageSize = 10, fullDownloads = TRUE) { ns <- shiny::NS(id) checkmate::assertNumeric(pageSizeChoices, min.len = 1, finite = TRUE, lower = 1) @@ -209,6 +212,7 @@ largeTableView <- function(id, pageSizeChoices = c(10,25,50,100), selectedPageSi #' #' @param columns List or reactable returning list of reactable::columnDef objects #' @param ... Additional reactable options (searchable, sortable +#' @family {LargeTables} largeTableServer <- function(id, ldt, inputParams, diff --git a/R/datasources-main.R b/R/datasources-main.R index 9dd221bf..16ee7743 100644 --- a/R/datasources-main.R +++ b/R/datasources-main.R @@ -23,7 +23,7 @@ #' #' @return The helper html file for the datasources module #' @export -#' +#' @family {Utils} datasourcesHelperFile <- function() { fileLoc <- system.file('datasources-www', "datasources.html", package = "OhdsiShinyModules") @@ -38,7 +38,7 @@ datasourcesHelperFile <- function() { #' #' @return The UI for the datasources module #' @export -#' +#' @family {Utils} datasourcesViewer <- function(id) { ns <- shiny::NS(id) @@ -80,7 +80,7 @@ datasourcesViewer <- function(id) { #' #' @return The server for the datasources module #' @export -#' +#' @family {Utils} datasourcesServer <- function( id, connectionHandler, diff --git a/R/helpers-componentsCreateCustomColDefList.R b/R/helpers-componentsCreateCustomColDefList.R index 02392197..d629cf46 100644 --- a/R/helpers-componentsCreateCustomColDefList.R +++ b/R/helpers-componentsCreateCustomColDefList.R @@ -13,7 +13,7 @@ #' #' @return A named list of reactable::colDef objects #' @export -#' +#' @family {Utils} createCustomColDefList <- function(rawColNames, niceColNames = NULL, tooltipText = NULL, case = NULL, customColDefOptions = NULL) { @@ -86,7 +86,7 @@ createCustomColDefList <- function(rawColNames, niceColNames = NULL, #' #' @return html code to make a button label #' @export -#' +#' @family {Utils} makeButtonLabel <- function(label) { as.character(htmltools::tags$div(htmltools::tags$button(paste(label)))) } diff --git a/R/phevaluator-main.R b/R/phevaluator-main.R index 74353bb9..17ecfd82 100644 --- a/R/phevaluator-main.R +++ b/R/phevaluator-main.R @@ -25,7 +25,7 @@ #' @return String location of the phevaluator helper file #' #' @export -#' +#' @family {PheValuator} phevaluatorHelperFile <- function() { fileLoc <- system.file('phevaluator-www', "phevaluator.html", package = "OhdsiShinyModules") @@ -40,7 +40,7 @@ phevaluatorHelperFile <- function() { #' @return The user interface to the phevaluator results viewer #' #' @export -#' +#' @family {PheValuator} phevaluatorViewer <- function(id) { ns <- shiny::NS(id) @@ -141,8 +141,7 @@ phevaluatorViewer <- function(id) { #' @return The phevaluator main module server #' #' @export -#' - +#' @family {PheValuator} phevaluatorServer <- function( id, connectionHandler, diff --git a/_pkgdown.yml b/_pkgdown.yml index 00fb3c41..67d66644 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -110,12 +110,12 @@ reference: - cohortMethodServer - cohortMethodAttritionViewer - cohortMethodAttritionServer + - cohortMethodResultSummaryViewer + - cohortMethodResultSummaryServer - cohortMethodCovariateBalanceViewer - cohortMethodCovariateBalanceServer - cohortMethodDiagnosticsSummaryViewer - cohortMethodDiagnosticsSummaryServer - - cohortMethodForestPlotViewer - - cohortMethodForestPlotServer - cohortMethodKaplanMeierViewer - cohortMethodKaplanMeierServer - cohortMethodPopulationCharacteristicsViewer @@ -126,14 +126,14 @@ reference: - cohortMethodPropensityModelServer - cohortMethodPropensityScoreDistViewer - cohortMethodPropensityScoreDistServer - - cohortMethodResultsTableViewer - - cohortMethodResultsTableServer - - cohortMethodSubgroupsViewer - - cohortMethodSubgroupsServer - cohortMethodSystematicErrorViewer - cohortMethodSystematicErrorServer - - cohortMethodTitlePanelViewer - - cohortMethodTitlePanelServer + - evidenceSynthesisHelperFile + - evidenceSynthesisServer + - evidenceSynthesisViewer + - sccsHelperFile + - sccsServer + - sccsView - title: "Data diagnostics module" desc: > Modules for the DataDiagnostics package. @@ -149,7 +149,7 @@ reference: desc: > Modules for the CohortDiagnostics package. contents: - - cohortDiagnosticsSever + - cohortDiagnosticsServer - cohortDiagnosticsView - cohortDiagnosticsHelperFile - cohortDiagCharacterizationView @@ -170,4 +170,15 @@ reference: - timeDistributionsView - visitContextView - inclusionRulesView - \ No newline at end of file + - title: Cohort Diagnostics + desc: "Run cohort diagnostics, deploy shiny" + contents: has_concept("CohortDiagnostics") + - title: "PheValuator module" + desc: "PheValuator module" + contents: has_concept("PheValuator") + - title: Large Table + desc: "Utilities for tables that contain large amounts of rows" + contents: has_concept("LargeTables") + - title: Utils + desc: "Shared usable utility functions" + contents: has_concept("Utils") \ No newline at end of file diff --git a/docs/index.html b/docs/index.html index 93b3088b..9b6bb7f2 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ OhdsiShinyModules - 2.1.4 + 2.1.5 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 082aed1a..a8323449 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,7 +1,7 @@ -pandoc: 3.1.12.3 +pandoc: '3.2' pkgdown: 2.0.9 pkgdown_sha: ~ articles: AddingShinyModules: AddingShinyModules.html -last_built: 2024-04-25T21:46Z +last_built: 2024-07-15T14:49Z From d88d3cf8fe071da244cb8e7b73efcc66e276172f Mon Sep 17 00:00:00 2001 From: jgilber2 Date: Mon, 15 Jul 2024 08:21:36 -0700 Subject: [PATCH 5/7] Fixed broken package docs --- R/OhdsiShinyModules.R | 4 +- docs/404.html | 2 +- docs/articles/AddingShinyModules.html | 28 +- docs/articles/index.html | 8 +- docs/authors.html | 6 +- docs/news/index.html | 66 ++++- docs/reference/OhdsiShinyModules.html | 8 +- docs/reference/aboutHelperFile.html | 8 +- docs/reference/aboutServer.html | 22 +- docs/reference/aboutViewer.html | 8 +- docs/reference/cohortCountsModule.html | 10 +- docs/reference/cohortCountsView.html | 8 +- docs/reference/cohortDefinitionsModule.html | 10 +- docs/reference/cohortDefinitionsView.html | 8 +- .../cohortDiagnosticsHelperFile.html | 14 +- docs/reference/cohortDiagnosticsView.html | 8 +- docs/reference/cohortGeneratorHelperFile.html | 8 +- docs/reference/cohortGeneratorServer.html | 8 +- docs/reference/cohortGeneratorViewer.html | 8 +- docs/reference/cohortOverlapView.html | 8 +- .../compareCohortCharacterizationView.html | 8 +- docs/reference/conceptsInDataSourceView.html | 8 +- .../reference/createCdDatabaseDataSource.html | 40 +-- docs/reference/dataDiagnosticDrillServer.html | 18 +- docs/reference/dataDiagnosticDrillViewer.html | 8 +- docs/reference/dataDiagnosticHelperFile.html | 8 +- docs/reference/dataDiagnosticServer.html | 8 +- .../dataDiagnosticSummaryServer.html | 18 +- .../dataDiagnosticSummaryViewer.html | 8 +- docs/reference/dataDiagnosticViewer.html | 8 +- docs/reference/databaseInformationView.html | 8 +- .../reference/getCirceRenderedExpression.html | 8 +- docs/reference/getEnabledCdReports.html | 10 +- docs/reference/getLogoImage.html | 8 +- docs/reference/incidenceRatesView.html | 8 +- docs/reference/inclusionRulesView.html | 8 +- docs/reference/index.html | 268 ++++++++++++------ docs/reference/indexEventBreakdownView.html | 8 +- docs/reference/orpahanConceptsView.html | 14 +- docs/reference/timeDistributionsView.html | 8 +- docs/reference/visitContextView.html | 8 +- docs/sitemap.xml | 243 ++++++++++++++++ extras/OhdsiShinyModules.pdf | Bin 176724 -> 181102 bytes extras/PackageMaintenance.R | 2 +- man/LargeDataTable.Rd | 5 +- man/cohortDiagnosticsHelperFile.Rd | 6 + man/cohortDiagnosticsServer.Rd | 6 + man/createCustomColDefList.Rd | 10 + man/createLargeSqlQueryDt.Rd | 6 + man/datasourcesHelperFile.Rd | 10 + man/datasourcesServer.Rd | 10 + man/datasourcesViewer.Rd | 10 + man/largeTableServer.Rd | 6 + man/largeTableView.Rd | 6 + man/makeButtonLabel.Rd | 10 + man/orpahanConceptsView.Rd | 6 + man/phevaluatorHelperFile.Rd | 6 + man/phevaluatorServer.Rd | 6 + man/phevaluatorViewer.Rd | 6 + man/resultTableServer.Rd | 10 + man/resultTableViewer.Rd | 10 + 61 files changed, 811 insertions(+), 301 deletions(-) diff --git a/R/OhdsiShinyModules.R b/R/OhdsiShinyModules.R index be906dcd..77722f5a 100644 --- a/R/OhdsiShinyModules.R +++ b/R/OhdsiShinyModules.R @@ -19,9 +19,7 @@ #' OhdsiShinyModules #' #' @description A selection of shiny modules for exploring standardized OHDSI results -#' -#' @docType package #' @name OhdsiShinyModules #' @importFrom dplyr %>% #' @importFrom rlang .data -NULL +"_PACKAGE" diff --git a/docs/404.html b/docs/404.html index ede78397..52ada86d 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ OhdsiShinyModules - 2.1.4 + 2.1.5 diff --git a/docs/articles/AddingShinyModules.html b/docs/articles/AddingShinyModules.html index 92b0fbdb..d7a37445 100644 --- a/docs/articles/AddingShinyModules.html +++ b/docs/articles/AddingShinyModules.html @@ -6,7 +6,7 @@ Adding Shiny Modules • OhdsiShinyModules - + @@ -33,7 +33,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -69,7 +69,7 @@
  • - + hadesLogo
  • @@ -84,7 +84,7 @@

    All vignettes

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/authors.html b/docs/authors.html index 111959ba..3e4ae166 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ OhdsiShinyModules - 2.1.4 + 2.1.5 @@ -85,13 +85,13 @@

    Citation

    Reps J (2024). OhdsiShinyModules: Repository of Shiny Modules for OHDSI Result Viewers. -R package version 2.1.4. +R package version 2.1.5. 

    @Manual{,
   title = {OhdsiShinyModules: Repository of Shiny Modules for OHDSI Result Viewers},
   author = {Jenna Reps},
   year = {2024},
-  note = {R package version 2.1.4},
+  note = {R package version 2.1.5},
 }
    diff --git a/docs/news/index.html b/docs/news/index.html index e9c6b0f8..b2ad7c14 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -1,5 +1,5 @@ -Changelog • OhdsiShinyModulesChangelog • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -69,6 +69,64 @@

    Changelog

    +
    +

    OhdsiShinyModules v2.1.5

    +

    Fixed issue in DatabaseConnector check for pooled connections of sqlite databases on cohort diagnotiscs load

    +
    +
    +

    OhdsiShinyModules v2.1.4

    +

    Fixed missing call to dplyr in CohortDiagnostics load up

    +
    +
    +

    OhdsiShinyModules v2.1.3

    +

    Hotfix release to fix issue with cohort diagnostics reports hanging on load when using DatabaseConnector::dbListTables on postgres backends

    +
    +
    +

    OhdsiShinyModules v2.1.2

    +

    Fixed bug in cohort diagnostics incidence rate plots not showing for different strata

    +
    +
    +

    OhdsiShinyModules v2.1.1

    +

    Fixed bug in cohort diagnostics load up of orphan concepts server causing app to crash on load

    +
    +
    +

    OhdsiShinyModules v2.1.0

    +

    Support for data models from SCCS version 5.2.0 Support for data models from Cohort Method version 5.2.0 Fixes for CohortDiagnostics Orpahan concept table by re-writing with DB level pagination Automated release of Docker Images upon package release

    +
    +
    +

    OhdsiShinyModules v2.0.2

    +

    edited characterization server to work with new aggregate features method in characterization package edited characterization server to work when one or more characterization result is missing edited evidence synth module to highlight the bayesian and fix issue with comparison names not showing

    +
    +
    +

    OhdsiShinyModules v2.0.1

    +

    Bug Fixes: - Fix for CohortDiagnostic app not loading when characterization was set to FALSE

    +
    +
    +

    OhdsiShinyModules v2.0.0

    +
    • updated all models to use the same resultDatabaseSettings
      • +
    • made module function naming consistent (modules named after analysis packages)
      • +
    • made table prefix inputs consistent across modules
      • +
    • updated patientlevelprediction, cohortmethod and sccs to look similar.
      • +
    • Updated Cohort Diagnostics characterization to improve overall performance
      • +
    • Added plots for incidence in characterization module
      • +
    • Added PheValuator package
      • +
    • Numerous bug fixes (see github issues)
      • +
    +
    +

    OhdsiShinyModules v1.1.0

    +
    • Udated the style for Characterization
      • +
    • added SCCS module (jpg)
      • +
    • added meta (evidence synthesis) module
      • +
    • removal of ggiraph package and replacement with plotly plots for CohortDiagnostics plots: Time Distributions, Overlap, Incidence and Compare Cohort Characterization (jpg)
      • +
    +
    +

    OhdsiShinyModules v1.0.4

    +
    • Fixed an issue with hide/show tabs and reactives in the plp viewer
      • +
    +
    +

    OhdsiShinyModules v1.0.3

    +
    • Fixed a glitchy prediction viewer
      • +

    OhdsiShinyModules v1.0.2

    • Added Cohort Diagnostics module
      • @@ -103,7 +161,7 @@

      OhdsiS

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/OhdsiShinyModules.html b/docs/reference/OhdsiShinyModules.html index ea28b297..68cf8a49 100644 --- a/docs/reference/OhdsiShinyModules.html +++ b/docs/reference/OhdsiShinyModules.html @@ -1,5 +1,5 @@ -OhdsiShinyModules — OhdsiShinyModules • OhdsiShinyModulesOhdsiShinyModules — OhdsiShinyModules • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -88,7 +88,7 @@

    OhdsiShinyModules

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/aboutHelperFile.html b/docs/reference/aboutHelperFile.html index afedda46..ed4bc578 100644 --- a/docs/reference/aboutHelperFile.html +++ b/docs/reference/aboutHelperFile.html @@ -1,5 +1,5 @@ -The location of the about module helper file — aboutHelperFile • OhdsiShinyModulesThe location of the about module helper file — aboutHelperFile • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -101,7 +101,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/aboutServer.html b/docs/reference/aboutServer.html index d71c7f48..11e3769e 100644 --- a/docs/reference/aboutServer.html +++ b/docs/reference/aboutServer.html @@ -1,5 +1,5 @@ -The module server for the shiny app home — aboutServer • OhdsiShinyModulesThe module server for the shiny app home — aboutServer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -107,7 +107,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortCountsModule.html b/docs/reference/cohortCountsModule.html index a15179e1..d6a52896 100644 --- a/docs/reference/cohortCountsModule.html +++ b/docs/reference/cohortCountsModule.html @@ -1,5 +1,5 @@ -Shiny module for cohort counts — cohortCountsModule • OhdsiShinyModulesShiny module for cohort counts — cohortCountsModule • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortDefinitionsModule.html b/docs/reference/cohortDefinitionsModule.html index d3f14ec6..af11188f 100644 --- a/docs/reference/cohortDefinitionsModule.html +++ b/docs/reference/cohortDefinitionsModule.html @@ -1,5 +1,5 @@ -Cohort Definition module — cohortDefinitionsModule • OhdsiShinyModulesCohort Definition module — cohortDefinitionsModule • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortDiagnosticsHelperFile.html b/docs/reference/cohortDiagnosticsHelperFile.html index db276428..9802f01e 100644 --- a/docs/reference/cohortDiagnosticsHelperFile.html +++ b/docs/reference/cohortDiagnosticsHelperFile.html @@ -1,5 +1,5 @@ -The location of the description module helper file — cohortDiagnosticsHelperFile • OhdsiShinyModulesThe location of the description module helper file — cohortDiagnosticsHelperFile • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -107,7 +107,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortGeneratorHelperFile.html b/docs/reference/cohortGeneratorHelperFile.html index 16cbed10..6ec06018 100644 --- a/docs/reference/cohortGeneratorHelperFile.html +++ b/docs/reference/cohortGeneratorHelperFile.html @@ -1,5 +1,5 @@ -The location of the cohort-generator module helper file — cohortGeneratorHelperFile • OhdsiShinyModulesThe location of the cohort-generator module helper file — cohortGeneratorHelperFile • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -101,7 +101,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortGeneratorServer.html b/docs/reference/cohortGeneratorServer.html index 456f54af..84f0e2ce 100644 --- a/docs/reference/cohortGeneratorServer.html +++ b/docs/reference/cohortGeneratorServer.html @@ -1,5 +1,5 @@ -The module server for the main cohort generator module — cohortGeneratorServer • OhdsiShinyModulesThe module server for the main cohort generator module — cohortGeneratorServer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -111,7 +111,7 @@

    Value

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortGeneratorViewer.html b/docs/reference/cohortGeneratorViewer.html index f816dd94..07af9ddc 100644 --- a/docs/reference/cohortGeneratorViewer.html +++ b/docs/reference/cohortGeneratorViewer.html @@ -1,5 +1,5 @@ -The viewer of the main cohort generator module — cohortGeneratorViewer • OhdsiShinyModulesThe viewer of the main cohort generator module — cohortGeneratorViewer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -103,7 +103,7 @@

    Value

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/cohortOverlapView.html b/docs/reference/cohortOverlapView.html index d70ab558..36bafc26 100644 --- a/docs/reference/cohortOverlapView.html +++ b/docs/reference/cohortOverlapView.html @@ -1,5 +1,5 @@ -Cohort Overlap View — cohortOverlapView • OhdsiShinyModulesCohort Overlap View — cohortOverlapView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/compareCohortCharacterizationView.html b/docs/reference/compareCohortCharacterizationView.html index a0d4039a..76811ab4 100644 --- a/docs/reference/compareCohortCharacterizationView.html +++ b/docs/reference/compareCohortCharacterizationView.html @@ -1,5 +1,5 @@ -compare characterization view — compareCohortCharacterizationView • OhdsiShinyModulescompare characterization view — compareCohortCharacterizationView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -104,7 +104,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/conceptsInDataSourceView.html b/docs/reference/conceptsInDataSourceView.html index b628a866..7eac9260 100644 --- a/docs/reference/conceptsInDataSourceView.html +++ b/docs/reference/conceptsInDataSourceView.html @@ -1,5 +1,5 @@ -concepts In DataSource View — conceptsInDataSourceView • OhdsiShinyModulesconcepts In DataSource View — conceptsInDataSourceView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/createCdDatabaseDataSource.html b/docs/reference/createCdDatabaseDataSource.html index 699b7d1f..fe9a67a9 100644 --- a/docs/reference/createCdDatabaseDataSource.html +++ b/docs/reference/createCdDatabaseDataSource.html @@ -1,5 +1,5 @@ -Create a CD data source from a database — createCdDatabaseDataSource • OhdsiShinyModulesCreate a CD data source from a database — createCdDatabaseDataSource • OhdsiShinyModulesThe module server for exploring prediction summary results — dataDiagnosticDrillServer • OhdsiShinyModulesThe module server for exploring prediction summary results — dataDiagnosticDrillServer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -107,7 +107,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/dataDiagnosticHelperFile.html b/docs/reference/dataDiagnosticHelperFile.html index 31946f8f..c9212cff 100644 --- a/docs/reference/dataDiagnosticHelperFile.html +++ b/docs/reference/dataDiagnosticHelperFile.html @@ -1,5 +1,5 @@ -The location of the data-diagnostic module helper file — dataDiagnosticHelperFile • OhdsiShinyModulesThe location of the data-diagnostic module helper file — dataDiagnosticHelperFile • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -101,7 +101,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/dataDiagnosticServer.html b/docs/reference/dataDiagnosticServer.html index f10e7718..98d305b0 100644 --- a/docs/reference/dataDiagnosticServer.html +++ b/docs/reference/dataDiagnosticServer.html @@ -1,5 +1,5 @@ -The module server for exploring data-diagnostic — dataDiagnosticServer • OhdsiShinyModulesThe module server for exploring data-diagnostic — dataDiagnosticServer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -119,7 +119,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/dataDiagnosticSummaryServer.html b/docs/reference/dataDiagnosticSummaryServer.html index 39bcc00e..85d3f546 100644 --- a/docs/reference/dataDiagnosticSummaryServer.html +++ b/docs/reference/dataDiagnosticSummaryServer.html @@ -1,5 +1,5 @@ -The module server for exploring prediction summary results — dataDiagnosticSummaryServer • OhdsiShinyModulesThe module server for exploring prediction summary results — dataDiagnosticSummaryServer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -107,7 +107,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/dataDiagnosticViewer.html b/docs/reference/dataDiagnosticViewer.html index c7fee0d1..26e38dc2 100644 --- a/docs/reference/dataDiagnosticViewer.html +++ b/docs/reference/dataDiagnosticViewer.html @@ -1,5 +1,5 @@ -The module viewer for exploring data-diagnostic — dataDiagnosticViewer • OhdsiShinyModulesThe module viewer for exploring data-diagnostic — dataDiagnosticViewer • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -107,7 +107,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/databaseInformationView.html b/docs/reference/databaseInformationView.html index 5affae6a..7865924a 100644 --- a/docs/reference/databaseInformationView.html +++ b/docs/reference/databaseInformationView.html @@ -1,5 +1,5 @@ -database Information View — databaseInformationView • OhdsiShinyModulesdatabase Information View — databaseInformationView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/getCirceRenderedExpression.html b/docs/reference/getCirceRenderedExpression.html index 6c601eb4..bd91c935 100644 --- a/docs/reference/getCirceRenderedExpression.html +++ b/docs/reference/getCirceRenderedExpression.html @@ -1,5 +1,5 @@ -Returns list with circe generated documentation — getCirceRenderedExpression • OhdsiShinyModulesReturns list with circe generated documentation — getCirceRenderedExpression • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -117,7 +117,7 @@

    Value

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/getEnabledCdReports.html b/docs/reference/getEnabledCdReports.html index 4fdaeeba..25438669 100644 --- a/docs/reference/getEnabledCdReports.html +++ b/docs/reference/getEnabledCdReports.html @@ -1,5 +1,5 @@ -Get enable cd reports from available data — getEnabledCdReports • OhdsiShinyModulesGet enable cd reports from available data — getEnabledCdReports • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -101,7 +101,7 @@

    Details

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/incidenceRatesView.html b/docs/reference/incidenceRatesView.html index c2168b05..6dc8cdf8 100644 --- a/docs/reference/incidenceRatesView.html +++ b/docs/reference/incidenceRatesView.html @@ -1,5 +1,5 @@ -incidence Rates View — incidenceRatesView • OhdsiShinyModulesincidence Rates View — incidenceRatesView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/inclusionRulesView.html b/docs/reference/inclusionRulesView.html index e4378210..e2c0504e 100644 --- a/docs/reference/inclusionRulesView.html +++ b/docs/reference/inclusionRulesView.html @@ -1,5 +1,5 @@ -inclusion Rules View — inclusionRulesView • OhdsiShinyModulesinclusion Rules View — inclusionRulesView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/orpahanConceptsView.html b/docs/reference/orpahanConceptsView.html index 060bbb37..ec76fe48 100644 --- a/docs/reference/orpahanConceptsView.html +++ b/docs/reference/orpahanConceptsView.html @@ -1,5 +1,5 @@ -Orphan Concepts View — orpahanConceptsView • OhdsiShinyModulesOrphan Concepts View — orpahanConceptsView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog
  • - + hadesLogo
  • @@ -97,7 +97,7 @@

    Arguments

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/visitContextView.html b/docs/reference/visitContextView.html index 39b4f5a9..dc1901f7 100644 --- a/docs/reference/visitContextView.html +++ b/docs/reference/visitContextView.html @@ -1,5 +1,5 @@ -Visit context module view — visitContextView • OhdsiShinyModulesVisit context module view — visitContextView • OhdsiShinyModules @@ -17,7 +17,7 @@ OhdsiShinyModules - 1.0.2 + 2.1.5 @@ -48,7 +48,7 @@ Changelog