diff --git a/.github/workflows/R_CMD_check_Hades.yaml b/.github/workflows/R_CMD_check_Hades.yaml
index 36fe3f06..2a960c64 100644
--- a/.github/workflows/R_CMD_check_Hades.yaml
+++ b/.github/workflows/R_CMD_check_Hades.yaml
@@ -52,7 +52,7 @@ jobs:
CDM5_SPARK_CONNECTION_STRING: ${{ secrets.CDM5_SPARK_CONNECTION_STRING }}
steps:
- - uses: actions/checkout@v2
+ - uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
@@ -85,7 +85,7 @@ jobs:
- name: Upload source package
if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/main'
- uses: actions/upload-artifact@v2
+ uses: actions/upload-artifact@v4
with:
name: package_tarball
path: check/*.tar.gz
@@ -113,7 +113,7 @@ jobs:
steps:
- - uses: actions/checkout@v2
+ - uses: actions/checkout@v4
with:
fetch-depth: 0
@@ -155,7 +155,7 @@ jobs:
- name: Download package tarball
if: ${{ env.new_version != '' }}
- uses: actions/download-artifact@v2
+ uses: actions/download-artifact@v4
with:
name: package_tarball
diff --git a/R/characterization-caseSeries.R b/R/characterization-caseSeries.R
index 9a3ef0f4..af791b57 100644
--- a/R/characterization-caseSeries.R
+++ b/R/characterization-caseSeries.R
@@ -74,20 +74,38 @@ characterizationCaseSeriesServer <- function(
output$inputs <- shiny::renderUI({ # need to make reactive?
shiny::div(
- shiny::selectInput(
+ shinyWidgets::pickerInput(
inputId = session$ns('databaseId'),
label = 'Database: ',
choices = options()$databaseIds,
selected = options()$databaseIds[1],
- multiple = F
+ multiple = F,
+ options = shinyWidgets::pickerOptions(
+ actionsBox = TRUE,
+ liveSearch = TRUE,
+ size = 10,
+ dropupAuto = TRUE,
+ liveSearchStyle = "contains",
+ liveSearchPlaceholder = "Type here to search",
+ virtualScroll = 50
+ )
),
- shiny::selectInput(
+ shinyWidgets::pickerInput(
inputId = session$ns('tarInd'),
label = 'Time-at-risk: ',
choices = options()$tarInds,
selected = options()$tarInds[1],
- multiple = F
+ multiple = F,
+ options = shinyWidgets::pickerOptions(
+ actionsBox = TRUE,
+ liveSearch = TRUE,
+ size = 10,
+ dropupAuto = TRUE,
+ liveSearchStyle = "contains",
+ liveSearchPlaceholder = "Type here to search",
+ virtualScroll = 50
+ )
),
shiny::actionButton(
diff --git a/R/characterization-database.R b/R/characterization-database.R
index 46b3b31e..e787ee8e 100644
--- a/R/characterization-database.R
+++ b/R/characterization-database.R
@@ -85,12 +85,21 @@ characterizationDatabaseComparisonServer <- function(
output$inputs <- shiny::renderUI({
shiny::div(
- shiny::selectInput(
+ shinyWidgets::pickerInput(
inputId = session$ns('databaseIds'),
label = 'Databases: ',
choices = inputVals()$databaseIds,
selected = inputVals()$databaseIds[1],
- multiple = T
+ multiple = T,
+ options = shinyWidgets::pickerOptions(
+ actionsBox = TRUE,
+ liveSearch = TRUE,
+ size = 10,
+ dropupAuto = TRUE,
+ liveSearchStyle = "contains",
+ liveSearchPlaceholder = "Type here to search",
+ virtualScroll = 50
+ )
),
shiny::sliderInput(
diff --git a/R/characterization-incidence.R b/R/characterization-incidence.R
index 60a2d20b..4f6ca8ec 100644
--- a/R/characterization-incidence.R
+++ b/R/characterization-incidence.R
@@ -268,21 +268,27 @@ characterizationIncidenceServer <- function(
style = "font-weight: bold; font-size: 20px; text-align: center; margin-bottom: 20px;"
),
- shiny::selectInput(
+ shinyWidgets::pickerInput(
inputId = session$ns('outcomeIds'),
label = 'Outcome: ',
choices = outcomes(),
- selected = 1,
+ selected = outcomes()[1],
multiple = T,
- selectize = TRUE,
- width = NULL,
- size = NULL
+ options = shinyWidgets::pickerOptions(
+ actionsBox = TRUE,
+ liveSearch = TRUE,
+ size = 10,
+ dropupAuto = TRUE,
+ liveSearchStyle = "contains",
+ liveSearchPlaceholder = "Type here to search",
+ virtualScroll = 50
+ )
),
shinyWidgets::pickerInput(
inputId = session$ns('databaseSelector'),
label = 'Filter By Database: ',
- choices = ciOptions$databases,
+ choices = sort(ciOptions$databases),
selected = ciOptions$databases,
multiple = T,
options = shinyWidgets::pickerOptions(
diff --git a/R/characterization-riskFactors.R b/R/characterization-riskFactors.R
index 7623c0e9..373ef5ad 100644
--- a/R/characterization-riskFactors.R
+++ b/R/characterization-riskFactors.R
@@ -684,8 +684,41 @@ characteriationCountsColDefs <- function(
filterable = T
),
+ minPriorObservation = reactable::colDef(
+ header = withTooltip("Min Prior Observation",
+ "Minimum prior observation time (days)"),
+ filterable = T,
+ filterInput = function(values, name) {
+ shiny::tags$select(
+ # Set to undefined to clear the filter
+ onchange = sprintf("Reactable.setFilter('%s', '%s', event.target.value || undefined)", elementId, name),
+ # "All" has an empty value to clear the filter, and is the default option
+ shiny::tags$option(value = "", "All"),
+ lapply(unique(values), shiny::tags$option),
+ "aria-label" = sprintf("Filter %s", name),
+ style = "width: 100%; height: 28px;"
+ )
+ }
+ ),
+ outcomeWashoutDays = reactable::colDef(
+ header = withTooltip("Outcome Washout Days",
+ "Number of days for the outcome washout"),
+ filterable = T,
+ filterInput = function(values, name) {
+ shiny::tags$select(
+ # Set to undefined to clear the filter
+ onchange = sprintf("Reactable.setFilter('%s', '%s', event.target.value || undefined)", elementId, name),
+ # "All" has an empty value to clear the filter, and is the default option
+ shiny::tags$option(value = "", "All"),
+ lapply(unique(values), shiny::tags$option),
+ "aria-label" = sprintf("Filter %s", name),
+ style = "width: 100%; height: 28px;"
+ )
+ }
+ ),
+
rowCount = reactable::colDef(
- header = withTooltip("# rows",
+ header = withTooltip("# Rows",
"Number of exposures in the cohort (people can be in more than once)"),
cell = function(value) {
if(is.null(value)){return('< min threshold')}
@@ -694,7 +727,7 @@ characteriationCountsColDefs <- function(
}
),
personCount = reactable::colDef(
- header = withTooltip("# persons",
+ header = withTooltip("# Persons",
"Number of distinct people in the cohort"),
cell = function(value) {
if(is.null(value)){return('< min threshold')}
diff --git a/R/characterization-timeToEvent.R b/R/characterization-timeToEvent.R
index abfb322b..0252ed7e 100644
--- a/R/characterization-timeToEvent.R
+++ b/R/characterization-timeToEvent.R
@@ -174,12 +174,21 @@ characterizationTimeToEventServer <- function(
shiny::fluidPage(
shiny::fluidRow(
- shiny::selectInput(
+ shinyWidgets::pickerInput(
inputId = session$ns("databases"),
label = "Databases:",
multiple = T,
choices = unique(allData()$databaseName),
- selected = unique(allData()$databaseName)
+ selected = unique(allData()$databaseName),
+ options = shinyWidgets::pickerOptions(
+ actionsBox = TRUE,
+ liveSearch = TRUE,
+ size = 10,
+ dropupAuto = TRUE,
+ liveSearchStyle = "contains",
+ liveSearchPlaceholder = "Type here to search",
+ virtualScroll = 50
+ )
),
shiny::fluidRow(
diff --git a/R/cohort-diagnostics-cohort-overlap.R b/R/cohort-diagnostics-cohort-overlap.R
index 0d376642..efe4f5b3 100644
--- a/R/cohort-diagnostics-cohort-overlap.R
+++ b/R/cohort-diagnostics-cohort-overlap.R
@@ -128,7 +128,10 @@ plotCohortOverlap <- function(data,
title = "",
gridcolor = 'ffff'),
yaxis = list(zerolinecolor = '#ffff',
- title = database,
+ title = addTextBreaks(
+ text = database,
+ length = 25
+ ),
zerolinewidth = 1,
gridcolor = 'ffff'))
diff --git a/R/cohort-diagnostics-databaseInformation.R b/R/cohort-diagnostics-databaseInformation.R
index 6e1ac0d3..a75e3905 100644
--- a/R/cohort-diagnostics-databaseInformation.R
+++ b/R/cohort-diagnostics-databaseInformation.R
@@ -29,7 +29,7 @@ databaseInformationView <- function(id) {
shinydashboard::box(
width = NULL,
title = "Execution meta-data",
- shiny::tags$p("Each entry relates to execution on a given cdm. Results are merged between executions incrementally"),
+ shiny::tags$p("Each entry relates to execution on a given CDM. Results are merged between executions incrementally"),
shinycssloaders::withSpinner(reactable::reactableOutput(outputId = ns("databaseInformationTable"))),
shiny::conditionalPanel(
"output.databaseInformationTableIsSelected == true",
diff --git a/R/cohort-diagnostics-timeDistributions.R b/R/cohort-diagnostics-timeDistributions.R
index 764809f9..eadb6410 100644
--- a/R/cohort-diagnostics-timeDistributions.R
+++ b/R/cohort-diagnostics-timeDistributions.R
@@ -176,7 +176,10 @@ plotTimeDistribution <- function(data, shortNameRef = NULL, showMax = FALSE) {
zerolinewidth = 2,
gridcolor = 'ffff'),
yaxis = list(
- title = db,
+ title = addTextBreaks(
+ text = db,
+ length = 25 # change this based on plot height?
+ ),
showTitle = FALSE,
zerolinecolor = '#ffff',
zerolinewidth = 2,
diff --git a/R/cohort-generator-main.R b/R/cohort-generator-main.R
index 2e2f7b88..ee7fb97d 100644
--- a/R/cohort-generator-main.R
+++ b/R/cohort-generator-main.R
@@ -64,35 +64,41 @@ cohortGeneratorViewer <- function(id) {
collapsible = T,
collapsed = F,
width = '100%',
- title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
- #solidHeader = TRUE,
-
- shiny::downloadButton(
- ns('downloadCohortCountsFull'),
- label = "Download (Full)",
- icon = shiny::icon("download")
- ),
-
- shiny::actionButton(
- ns('downloadCohortCountsFiltered'),
- label = "Download (Filtered)",
- icon = shiny::icon("download"),
- onclick = paste0("Reactable.downloadDataCSV('", ns('cohortCounts'),
- "', 'cohort-count-data-filtered-", Sys.Date(), ".csv')")
- )
- ),
+ # title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
+ # #solidHeader = TRUE,
+ #
+ # shiny::downloadButton(
+ # ns('downloadCohortCountsFull'),
+ # label = "Download (Full)",
+ # icon = shiny::icon("download")
+ # ),
+ #
+ # shiny::actionButton(
+ # ns('downloadCohortCountsFiltered'),
+ # label = "Download (Filtered)",
+ # icon = shiny::icon("download"),
+ # onclick = paste0("Reactable.downloadDataCSV('", ns('cohortCounts'),
+ # "', 'cohort-count-data-filtered-", Sys.Date(), ".csv')")
+ # )
+ # ),
- shinydashboard::box(
- width = '100%',
- title = shiny::span( shiny::icon("table"), 'Counts Table'),
- #solidHeader = TRUE,
-
- shiny::uiOutput(ns("selectColsCohortCounts")
- ),
-
- reactable::reactableOutput(
- outputId = ns("cohortCounts")
- )
+ # shinydashboard::box(
+ # width = '100%',
+ # title = shiny::span( shiny::icon("table"), 'Counts Table'),
+ # #solidHeader = TRUE,
+ #
+ # shiny::uiOutput(ns("selectColsCohortCounts")
+ # ),
+ #
+ # reactable::reactableOutput(
+ # outputId = ns("cohortCounts")
+ # )
+ # )
+
+ resultTableViewer(
+ ns("cohortCounts"),
+ downloadedFileName = "cohortCountsTable-"
+ )
)
),
@@ -103,29 +109,30 @@ cohortGeneratorViewer <- function(id) {
collapsible = T,
collapsed = F,
width = '100%',
- title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
- #solidHeader = TRUE,
+ # title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
+ # #solidHeader = TRUE,
+ #
+ # shiny::downloadButton(
+ # ns('downloadCohortGeneration'),
+ # label = "Download",
+ # icon = shiny::icon("download")
+ # )
+ # ),
+ #
+ # shinydashboard::box(
+ # status = 'info',
+ # width = '100%',
+ # title = shiny::span( shiny::icon("table"), 'Generation Table'),
+ # #solidHeader = TRUE,
+ #
+ # shiny::uiOutput(ns("selectColsCohortGeneration")
+ # ),
- shiny::downloadButton(
- ns('downloadCohortGeneration'),
- label = "Download",
- icon = shiny::icon("download")
- )
- ),
-
- shinydashboard::box(
- status = 'info',
- width = '100%',
- title = shiny::span( shiny::icon("table"), 'Generation Table'),
- #solidHeader = TRUE,
-
- shiny::uiOutput(ns("selectColsCohortGeneration")
- ),
-
- reactable::reactableOutput(
- outputId = ns("cohortGeneration")
- )
+ resultTableViewer(
+ ns("cohortGeneration"),
+ downloadedFileName = "cohortGenerationTable-"
)
+ )
),
shiny::tabPanel(
@@ -148,20 +155,20 @@ cohortGeneratorViewer <- function(id) {
shiny::uiOutput(ns("inputsText")),
- shinydashboard::box(
- collapsible = T,
- collapsed = F,
- width = '100%',
- title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
- #solidHeader = TRUE,
-
- shiny::downloadButton(
- ns('downloadAttritionTable'),
- label = "Download",
- icon = shiny::icon("download")
- )
- ),
-
+ # shinydashboard::box(
+ # collapsible = T,
+ # collapsed = F,
+ # width = '100%',
+ # title = shiny::span( shiny::icon("file-arrow-down"),'Download Data'),
+ # #solidHeader = TRUE,
+ #
+ # shiny::downloadButton(
+ # ns('downloadAttritionTable'),
+ # label = "Download",
+ # icon = shiny::icon("download")
+ # )
+ # ),
+ #
shinydashboard::box(
@@ -173,7 +180,8 @@ cohortGeneratorViewer <- function(id) {
# shiny::uiOutput(ns("selectColsCohortAttrition")
# ),
- resultTableViewer(ns('attritionTable'))
+ resultTableViewer(ns('attritionTable'),
+ downloadedFileName = "cohortAttritionTable-")
),
shinydashboard::box(
diff --git a/R/components-data-viewer.R b/R/components-data-viewer.R
index 6f544539..39bc33b0 100644
--- a/R/components-data-viewer.R
+++ b/R/components-data-viewer.R
@@ -5,6 +5,22 @@
#output: download buttons, table, and column selector
+filteredDownloadButton <- function(
+ tableId,
+ label = "Download (Filtered)",
+ filename = "filteredData.csv",
+ icon = shiny::icon("download")
+ ) {
+ shiny::tags$div(class = "col-sm-3",
+ htmltools::tags$button(
+ class = "btn btn-default",
+ shiny::tags$i(class = "fas fa-download", role = "presentation", "aria-label" = "download icon"),
+ label,
+ onclick = sprintf("Reactable.downloadDataCSV('%s', '%s')", tableId, filename)
+ )
+ )
+}
+
#' Result Table Viewer
#'
#' @param id string
@@ -37,32 +53,41 @@ resultTableViewer <- function(
icon = shiny::icon("download")
)
),
+
+ # shiny::column(
+ # width = 3,
+ # shiny::downloadButton(
+ # ns('downloadDataFiltered'),
+ # label = "Download (Filtered)",
+ # icon = shiny::icon("download"),
+ # onClick = "Shiny.setInputValue('table_state:to_csv',
+ # Reactable.getState('resultData').sortedData)"
+ # )
+ # )
+
shiny::column(
width = 3,
- shiny::actionButton(
- ns('downloadDataFiltered'),
- label = "Download (Filtered)",
- icon = shiny::icon("download"),
- onclick = paste0(
- "Reactable.downloadDataCSV('",
- ns('resultData'),
- "', 'result-data-filtered-",
- downloadedFileName,
- Sys.Date(),
- ".csv')"
+ htmltools::browsable(
+ htmltools::tagList(
+ filteredDownloadButton("resultDataFiltered", "Download (Filtered)",
+ filename = paste('result-data-filtered-', downloadedFileName, Sys.Date(), '.csv', sep = ''),
)
+ )
)
)
),
+
shiny::fluidRow(
shinycssloaders::withSpinner(
reactable::reactableOutput(
outputId = ns("resultData"),
- width = "100%")
+ width = "100%"
)
- )
+ )
+ )
)
- ))
+ )
+ )
}
@@ -349,6 +374,8 @@ fuzzySearch<- reactable::JS('function(rows, columnIds, filterValue) {
});
}')
+
+
output$resultData <- reactable::renderReactable({
if (is.null(input$dataCols)) {
data = newdf()
@@ -388,7 +415,7 @@ fuzzySearch<- reactable::JS('function(rows, columnIds, filterValue) {
rowStyle = list(
height = height
),
- elementId = elementIdName()
+ elementId = 'resultDataFiltered'
#, experimental
#theme = ohdsiReactableTheme
)
@@ -396,6 +423,16 @@ fuzzySearch<- reactable::JS('function(rows, columnIds, filterValue) {
# )
})
+ output$downloadDataFiltered <- shiny::downloadHandler(
+ filename = function() {
+ paste("result-data-filtered-", Sys.Date(), ".csv", sep = "")
+ },
+ content = function(file) {
+ data <- input$table_state
+ utils::write.csv(data, file)
+ }
+ )
+
# download full data button
output$downloadDataFull <- shiny::downloadHandler(
diff --git a/R/helpers-emptyPlotly.R b/R/helpers-emptyPlotly.R
index cac00fec..359b5e8b 100644
--- a/R/helpers-emptyPlotly.R
+++ b/R/helpers-emptyPlotly.R
@@ -12,3 +12,29 @@ emptyPlot <- function(title = NULL){
)
return(p)
}
+
+# takes a vector of 'text' and add
every 'length' characters
+addTextBreaks <- function(
+ text,
+ length
+){
+
+ textBreakVector <- c()
+
+ for(textVal in text){
+ textBreak <- ""
+ reps <- 1:ceiling(nchar(textVal)/length)
+ for(repsI in reps){
+ space <- substr(textVal, (repsI-1)*length, (repsI-1)*length) == ' '
+ if(space){
+ breakText <- '
'
+ } else{
+ breakText <- '
-'
+ }
+ textBreak <- paste0(textBreak, ifelse(repsI==1, '', breakText),substr(textVal, (repsI-1)*length+1, min(nchar(textVal), (repsI)*length)))
+ }
+ textBreakVector <- c(textBreakVector, textBreak)
+ }
+
+return(textBreakVector)
+}
diff --git a/R/helpers-sccsPlots.R b/R/helpers-sccsPlots.R
index 947557f5..f0668081 100644
--- a/R/helpers-sccsPlots.R
+++ b/R/helpers-sccsPlots.R
@@ -488,7 +488,15 @@ plotSeasonSpline <- function(seasonSpline, rrLim = c(0.1, 10)) {
# unknown function?
convertMonthToStartDate <- function(x){
- return(as.Date(x, origin = "1950-01-01"))
+ #return(as.Date(x, origin = "1950-01-01"))
+ year <- floor(x / 12)
+ month <- floor(x %% 12) + 1
+ return(as.Date(sprintf(
+ "%s-%s-%s",
+ year,
+ month,
+ 1
+ )))
}
# adding missing sccsModel as input
plotCalendarTimeSpline <- function(calendarTimeSpline, rrLim = c(0.1, 10)) {
diff --git a/R/patient-level-prediction-modelSummary.R b/R/patient-level-prediction-modelSummary.R
index 8b0a7348..9dee5c04 100644
--- a/R/patient-level-prediction-modelSummary.R
+++ b/R/patient-level-prediction-modelSummary.R
@@ -387,9 +387,12 @@ getModelDesignInfo <- function(
}
modelType <- connectionHandler$queryDb(
- 'select distinct model_type from
- @schema.@plp_table_prefixmodels
- where model_design_id = @model_design_id;',
+ 'select distinct ms.model_type from
+ @schema.@plp_table_prefixmodel_settings ms
+ inner join
+ @schema.@plp_table_prefixmodel_designs md
+ on ms.model_setting_id = md.model_setting_id
+ where md.model_design_id = @model_design_id;',
schema = resultDatabaseSettings$schema,
plp_table_prefix = resultDatabaseSettings$plpTablePrefix,
model_design_id = modelDesignId()
diff --git a/hs_err_pid47729.log b/hs_err_pid47729.log
deleted file mode 100644
index 9a096be6..00000000
--- a/hs_err_pid47729.log
+++ /dev/null
@@ -1,1199 +0,0 @@
-#
-# A fatal error has been detected by the Java Runtime Environment:
-#
-# SIGSEGV (0xb) at pc=0x000000010d4ca9d8, pid=47729, tid=259
-#
-# JRE version: OpenJDK Runtime Environment Corretto-17.0.5.8.1 (17.0.5+8) (build 17.0.5+8-LTS)
-# Java VM: OpenJDK 64-Bit Server VM Corretto-17.0.5.8.1 (17.0.5+8-LTS, mixed mode, sharing, tiered, compressed oops, compressed class ptrs, g1 gc, bsd-aarch64)
-# Problematic frame:
-# V [libjvm.dylib+0x4ca9d8] jni_GetObjectClass+0x124
-#
-# No core dump will be written. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
-#
-# If you would like to submit a bug report, please visit:
-# https://github.com/corretto/corretto-17/issues/
-#
-
---------------- S U M M A R Y ------------
-
-Command Line: -Djava.awt.headless=true -Xmx512m -Xrs vfprintf exit -Xss2m
-
-Host: "MacBookPro18,3" arm64, 8 cores, 16G, Darwin 23.5.0, macOS 14.5 (23F79)
-Time: Wed May 22 09:03:48 2024 EDT elapsed time: 74.128281 seconds (0d 0h 1m 14s)
-
---------------- T H R E A D ---------------
-
-Current thread (0x000000011e307600): JavaThread "main" [_thread_in_vm, id=259, stack(0x000000016b494000,0x000000016bc90000)]
-
-Stack: [0x000000016b494000,0x000000016bc90000], sp=0x000000016bc7a5c0, free space=8089k
-Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
-V [libjvm.dylib+0x4ca9d8] jni_GetObjectClass+0x124
-C [rJava.so+0x60fc] RcallMethod+0x37c
-C [libR.dylib+0x847ec] do_External+0x12c
-C [libR.dylib+0xbb9ec] bcEval+0x6eec
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0x11d400] dispatchMethod+0x300
-C [libR.dylib+0x11d0c0] Rf_usemethod+0x300
-C [libR.dylib+0x11d768] do_usemethod+0x2e8
-C [libR.dylib+0xbc0b0] bcEval+0x75b0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xb479c] Rf_eval+0x51c
-C [libR.dylib+0xd4264] do_begin+0x1a4
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd28e4] R_execMethod+0x2a4
-C [methods.so+0x3db0] R_dispatchGeneric+0x9b0
-C [libR.dylib+0x11fdb8] do_standardGeneric+0x1b8
-C [libR.dylib+0xbb9ec] bcEval+0x6eec
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd28e4] R_execMethod+0x2a4
-C [methods.so+0x3db0] R_dispatchGeneric+0x9b0
-C [libR.dylib+0x11fdb8] do_standardGeneric+0x1b8
-C [libR.dylib+0xbb9ec] bcEval+0x6eec
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xb479c] Rf_eval+0x51c
-C [libR.dylib+0xd4264] do_begin+0x1a4
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xcfa24] forcePromise+0xa4
-C [libR.dylib+0xdb938] getvar+0x2b8
-C [libR.dylib+0xb8a90] bcEval+0x3f90
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xcfa24] forcePromise+0xa4
-C [libR.dylib+0xdb938] getvar+0x2b8
-C [libR.dylib+0xb8a90] bcEval+0x3f90
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xcfa24] forcePromise+0xa4
-C [libR.dylib+0xdb938] getvar+0x2b8
-C [libR.dylib+0xb8a90] bcEval+0x3f90
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xcfa24] forcePromise+0xa4
-C [libR.dylib+0xdb938] getvar+0x2b8
-C [libR.dylib+0xb8a90] bcEval+0x3f90
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xb479c] Rf_eval+0x51c
-C [libR.dylib+0xd4264] do_begin+0x1a4
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xb479c] Rf_eval+0x51c
-C [libR.dylib+0xd4264] do_begin+0x1a4
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xd36d0] do_for+0xa50
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xd4264] do_begin+0x1a4
-C [libR.dylib+0xb46c8] Rf_eval+0x448
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd030c] Rf_applyClosure+0x20c
-C [libR.dylib+0xbb6b0] bcEval+0x6bb0
-C [libR.dylib+0xb44c8] Rf_eval+0x248
-C [libR.dylib+0xd1ad4] R_execClosure+0xc54
-C [libR.dylib+0xd28e4] R_execMethod+0x2a4
-C [methods.so+0x3db0] R_dispatchGeneric+0x9b0
-C [libR.dylib+0x11fdb8] do_standardGeneric+0x1b8
-......
-
-
-siginfo: si_signo: 11 (SIGSEGV), si_code: 2 (SEGV_ACCERR), si_addr: 0x0000000000000000
-
-Register to memory mapping:
-
- x0=0x0 is NULL
- x1=0x000000011c7d4198 points into unknown readable memory: 0x0000000000000000 | 00 00 00 00 00 00 00 00
- x2=0x000000010d4ca8b4: jni_GetObjectClass+0 in /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/server/libjvm.dylib at 0x000000010d000000
- x3=0x000000016bc7a9e0 is pointing into the stack for thread: 0x000000011e307600
- x4=0x000000016bc7aa08 is pointing into the stack for thread: 0x000000011e307600
- x5=0x0 is NULL
- x6=0x000000010b0b2cf8 points into unknown readable memory: 0x0000000611000006 | 06 00 00 11 06 00 00 00
- x7=0x000000017af81398 points into unknown readable memory: 0x0000000400100004 | 04 00 10 00 04 00 00 00
- x8=0x0000000000000001 is an unknown value
- x9=0x0000000000000006 is an unknown value
-x10=0x2010002030300000 is an unknown value
-x11=0x0000ffff11000000 is an unknown value
-x12=0xffff0000eeffffff is an unknown value
-x13=0x000000000000ffff is an unknown value
-x14=0x000000011e03d840 points into unknown readable memory: 0x0000000211000008 | 08 00 00 11 02 00 00 00
-x15=0xffff0000eeffffff is an unknown value
-x16=0x000000018cd9bd7c: pthread_jit_write_protect_np+0 in /usr/lib/system/libsystem_pthread.dylib at 0x000000018cd94000
-x17=0x000000011d9f76e0 points into unknown readable memory: 0xfffffffffffffffe | fe ff ff ff ff ff ff ff
-x18=0x0 is NULL
-x19=0x0000000000000001 is an unknown value
-x20=0x000000011e307600 is a thread
-x21=0x000000011e307600 is a thread
-x22=0x000000011c7d4198 points into unknown readable memory: 0x0000000000000000 | 00 00 00 00 00 00 00 00
-x23=0x000000010dc15000: _dyld_private+0 in /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/server/libjvm.dylib at 0x000000010d000000
-x24=0x0 is NULL
-x25=0x000000011e285800 points into unknown readable memory: 0x00000001f1000013 | 13 00 00 f1 01 00 00 00
-x26=0x0000000105ccdd50: R_NilValue+0 in /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libR.dylib at 0x0000000105890000
-x27=0x0000000105ccdd50: R_NilValue+0 in /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libR.dylib at 0x0000000105890000
-x28=0x0000000105ccdb58: R_BCNodeStackTop+0 in /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libR.dylib at 0x0000000105890000
-
-
-Registers:
- x0=0x0000000000000000 x1=0x000000011c7d4198 x2=0x000000010d4ca8b4 x3=0x000000016bc7a9e0
- x4=0x000000016bc7aa08 x5=0x0000000000000000 x6=0x000000010b0b2cf8 x7=0x000000017af81398
- x8=0x0000000000000001 x9=0x0000000000000006 x10=0x2010002030300000 x11=0x0000ffff11000000
-x12=0xffff0000eeffffff x13=0x000000000000ffff x14=0x000000011e03d840 x15=0xffff0000eeffffff
-x16=0x000000018cd9bd7c x17=0x000000011d9f76e0 x18=0x0000000000000000 x19=0x0000000000000001
-x20=0x000000011e307600 x21=0x000000011e307600 x22=0x000000011c7d4198 x23=0x000000010dc15000
-x24=0x0000000000000000 x25=0x000000011e285800 x26=0x0000000105ccdd50 x27=0x0000000105ccdd50
-x28=0x0000000105ccdb58 fp=0x000000016bc7a610 lr=0x000000010d4ca9c8 sp=0x000000016bc7a5c0
-pc=0x000000010d4ca9d8 cpsr=0x0000000040001000
-Top of Stack: (sp=0x000000016bc7a5c0)
-0x000000016bc7a5c0: 000000011e307600 0000000000000000
-0x000000016bc7a5d0: 000000016bc7a610 000000010520d230
-0x000000016bc7a5e0: 0000000105ccdd50 000000017a753600
-0x000000016bc7a5f0: 000000017a753670 000000011c7d4198
-0x000000016bc7a600: 0000000000000000 000000011e3078a8
-0x000000016bc7a610: 000000016bc7a9b0 00000001052060fc
-0x000000016bc7a620: 0000000163d2af48 00000001787e85d8
-0x000000016bc7a630: 000000016bc7b348 000000010b0b03c8
-0x000000016bc7a640: 0000000000000000 000000011e0207c8
-0x000000016bc7a650: 00000001200d9e10 00000001635143d8
-0x000000016bc7a660: 0000000163a1a580 0000000163a1a510
-0x000000016bc7a670: 0000000163a1a468 a9885dc159fb0020
-0x000000016bc7a680: 000000016bc7a6e0 0000000105961fac
-0x000000016bc7a690: 0000000105ccdd50 0000000105ccdce8
-0x000000016bc7a6a0: 000000011e0208e0 0000000105ccdd68
-0x000000016bc7a6b0: 0000000000000000 000000011e0511c8
-0x000000016bc7a6c0: 0000000163a1dd90 0000000163a1a468
-0x000000016bc7a6d0: 000000011e084408 000000011e0d2198
-0x000000016bc7a6e0: 000000016bc7a750 000000010596031c
-0x000000016bc7a6f0: 0000000105ccd570 000000011e020758
-0x000000016bc7a700: 0000000105ccdb58 0000000163a1dd90
-0x000000016bc7a710: 000000016bc7a750 0000000105960410
-0x000000016bc7a720: 000000010b35a0e0 000000011e084408
-0x000000016bc7a730: 0000000000000000 000000011e012c48
-0x000000016bc7a740: 0000000000000000 0000000105ccdd50
-0x000000016bc7a750: 000000011e01fdf0 000000011e609be0
-0x000000016bc7a760: 0000000178bb8e78 0000000178bb8dd0
-0x000000016bc7a770: 000000016bc7a7b0 00000001058c396c
-0x000000016bc7a780: 0000000000000000 000000010b0b2c50
-0x000000016bc7a790: 0000000105bc4000 0000000105ccdd50
-0x000000016bc7a7a0: 00000001200d9e28 0000000105ccdfd0
-0x000000016bc7a7b0: 0000000105ccdd00 000000017a753670
-
-Instructions: (pc=0x000000010d4ca9d8)
-0x000000010d4ca8d8: 9102e008 b8bfc108 129bd549 0b090108
-0x000000010d4ca8e8: 7100091f 540000a3 aa1503e0 941361b9
-0x000000010d4ca8f8: d2800015 1400000a b4000135 b9427ab3
-0x000000010d4ca908: 34000093 b9027abf 52800000 940be1db
-0x000000010d4ca918: 52800018 aa1503f4 14000004 d2800014
-0x000000010d4ca928: 52800013 52800038 910ce288 528000a9
-0x000000010d4ca938: 889ffd09 d5033bbf 910d0288 f8bfc108
-0x000000010d4ca948: 36000088 aa1403e0 52800021 940e0293
-0x000000010d4ca958: b9432e88 35000088 b9432a88 721e051f
-0x000000010d4ca968: 54000080 aa1403e0 52800001 941367d1
-0x000000010d4ca978: 910ce288 528000c9 889ffd09 a9007ff4
-0x000000010d4ca988: f9400688 b4000068 910003e0 940cdcca
-0x000000010d4ca998: aa1703e0 aa1603e1 d503201f f0003a57
-0x000000010d4ca9a8: 37000096 f94046e8 aa1603e0 14000004
-0x000000010d4ca9b8: d10006c0 f0003a68 f9471108 d63f0100
-0x000000010d4ca9c8: d0003c68 91168508 39400108 340001c8
-0x000000010d4ca9d8: b9400808 90003a89 911e0129 f940012a
-0x000000010d4ca9e8: b9400929 9ac92108 8b0a0108 f9403900
-0x000000010d4ca9f8: b4000100 f94046e8 d63f0100 aa0003e1
-0x000000010d4caa08: 14000005 f9400408 f9403900 b5ffff40
-0x000000010d4caa18: d2800001 aa1503e0 52800002 9400fc69
-0x000000010d4caa28: aa0003f5 d503201f f94007e8 b4000068
-0x000000010d4caa38: 910003e0 940cdcca f9407696 f9400ac8
-0x000000010d4caa48: f9400109 b4000089 aa1603e0 97fd1692
-0x000000010d4caa58: f9400ac8 f94006c9 f9000928 f9400ec8
-0x000000010d4caa68: f94006c9 f9000d28 f94012c8 f94006c9
-0x000000010d4caa78: f9001128 910a2280 97fa5350 d5033bbf
-0x000000010d4caa88: 910ce288 52800089 889ffd09 370000f8
-0x000000010d4caa98: b9427a88 6b13011f 54000080 b9027a93
-0x000000010d4caaa8: aa1303e0 940be175 aa1503e0 a9457bfd
-0x000000010d4caab8: a9444ff4 a94357f6 a9425ff8 910183ff
-0x000000010d4caac8: d65f03c0 a9bc5ff8 a90157f6 a9024ff4
-
-
-Stack slot to memory mapping:
-stack at sp + 0 slots: 0x000000011e307600 is a thread
-stack at sp + 1 slots: 0x0 is NULL
-stack at sp + 2 slots: 0x000000016bc7a610 is pointing into the stack for thread: 0x000000011e307600
-stack at sp + 3 slots: 0x000000010520d230: getJNIEnv+0x70 in /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/rJava/libs/rJava.so at 0x0000000105200000
-stack at sp + 4 slots: 0x0000000105ccdd50: R_NilValue+0 in /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libR.dylib at 0x0000000105890000
-stack at sp + 5 slots: 0x000000017a753600 points into unknown readable memory: 0x0000000000000002 | 02 00 00 00 00 00 00 00
-stack at sp + 6 slots: 0x000000017a753670 points into unknown readable memory: 0x0000000100000002 | 02 00 00 00 01 00 00 00
-stack at sp + 7 slots: 0x000000011c7d4198 points into unknown readable memory: 0x0000000000000000 | 00 00 00 00 00 00 00 00
-
-
---------------- P R O C E S S ---------------
-
-Threads class SMR info:
-_java_thread_list=0x000000010c704350, length=11, elements={
-0x000000011e307600, 0x000000010c88d400, 0x000000010c8c7400, 0x000000011e7fa800,
-0x000000011e2bd600, 0x000000011e32f600, 0x000000010cac2200, 0x000000011cc09200,
-0x000000011f155600, 0x000000011ce61800, 0x000000011e71fe00
-}
-
-Java Threads: ( => current thread )
-=>0x000000011e307600 JavaThread "main" [_thread_in_vm, id=259, stack(0x000000016b494000,0x000000016bc90000)]
- 0x000000010c88d400 JavaThread "Reference Handler" daemon [_thread_blocked, id=18179, stack(0x000000016ccb0000,0x000000016ceb3000)]
- 0x000000010c8c7400 JavaThread "Finalizer" daemon [_thread_blocked, id=19971, stack(0x000000016cebc000,0x000000016d0bf000)]
- 0x000000011e7fa800 JavaThread "Attach Listener" daemon [_thread_blocked, id=31491, stack(0x000000016d1e0000,0x000000016d3e3000)]
- 0x000000011e2bd600 JavaThread "Service Thread" daemon [_thread_blocked, id=31235, stack(0x000000016d3ec000,0x000000016d5ef000)]
- 0x000000011e32f600 JavaThread "Monitor Deflation Thread" daemon [_thread_blocked, id=30979, stack(0x000000016d5f8000,0x000000016d7fb000)]
- 0x000000010cac2200 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=23043, stack(0x000000016d804000,0x000000016da07000)]
- 0x000000011cc09200 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=23299, stack(0x000000016da10000,0x000000016dc13000)]
- 0x000000011f155600 JavaThread "Sweeper thread" daemon [_thread_blocked, id=23555, stack(0x000000016dc1c000,0x000000016de1f000)]
- 0x000000011ce61800 JavaThread "Notification Thread" daemon [_thread_blocked, id=23811, stack(0x000000016de28000,0x000000016e02b000)]
- 0x000000011e71fe00 JavaThread "Common-Cleaner" daemon [_thread_blocked, id=29187, stack(0x000000016e240000,0x000000016e443000)]
-
-Other Threads:
- 0x000000011d9c8140 VMThread "VM Thread" [stack: 0x000000016caa4000,0x000000016cca7000] [id=17411]
- 0x000000011c7dcb70 WatcherThread [stack: 0x000000016e034000,0x000000016e237000] [id=29443]
- 0x0000000105723230 GCTaskThread "GC Thread#0" [stack: 0x000000016c068000,0x000000016c26b000] [id=12035]
- 0x000000010e199ff0 GCTaskThread "GC Thread#1" [stack: 0x000000016e7fc000,0x000000016e9ff000] [id=43015]
- 0x000000010e196760 GCTaskThread "GC Thread#2" [stack: 0x000000016ea08000,0x000000016ec0b000] [id=33795]
- 0x00000001057bab20 GCTaskThread "GC Thread#3" [stack: 0x000000016ec14000,0x000000016ee17000] [id=34051]
- 0x00000001057bb320 GCTaskThread "GC Thread#4" [stack: 0x000000016ee20000,0x000000016f023000] [id=34307]
- 0x000000010e195130 GCTaskThread "GC Thread#5" [stack: 0x000000016f02c000,0x000000016f22f000] [id=41987]
- 0x000000011dae5a70 ConcurrentGCThread "G1 Main Marker" [stack: 0x000000016c274000,0x000000016c477000] [id=14595]
- 0x000000011d9e4db0 ConcurrentGCThread "G1 Conc#0" [stack: 0x000000016c480000,0x000000016c683000] [id=12803]
- 0x000000011dcc0640 ConcurrentGCThread "G1 Conc#1" [stack: 0x000000016e5f0000,0x000000016e7f3000] [id=43283]
- 0x000000011c7212a0 ConcurrentGCThread "G1 Refine#0" [stack: 0x000000016c68c000,0x000000016c88f000] [id=13315]
- 0x000000011c710c20 ConcurrentGCThread "G1 Service" [stack: 0x000000016c898000,0x000000016ca9b000] [id=13827]
-
-Threads with active compile tasks:
-
-VM state: not at safepoint (normal execution)
-
-VM Mutex/Monitor currently owned by a thread: None
-
-Heap address: 0x00000007e0000000, size: 512 MB, Compressed Oops mode: Zero based, Oop shift amount: 3
-
-CDS archive(s) mapped at: [0x0000000800000000-0x0000000800bd8000-0x0000000800bd8000), size 12419072, SharedBaseAddress: 0x0000000800000000, ArchiveRelocationMode: 0.
-Compressed class space mapped at: 0x0000000800c00000-0x0000000840c00000, reserved size: 1073741824
-Narrow klass base: 0x0000000800000000, Narrow klass shift: 0, Narrow klass range: 0x100000000
-
-GC Precious Log:
- CPUs: 8 total, 8 available
- Memory: 16384M
- Large Page Support: Disabled
- NUMA Support: Disabled
- Compressed Oops: Enabled (Zero based)
- Heap Region Size: 1M
- Heap Min Capacity: 8M
- Heap Initial Capacity: 256M
- Heap Max Capacity: 512M
- Pre-touch: Disabled
- Parallel Workers: 8
- Concurrent Workers: 2
- Concurrent Refinement Workers: 8
- Periodic GC: Disabled
-
-Heap:
- garbage-first heap total 24576K, used 10704K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 1 survivors (1024K)
- Metaspace used 9354K, committed 9472K, reserved 1064960K
- class space used 1004K, committed 1088K, reserved 1048576K
-
-Heap Regions: E=young(eden), S=young(survivor), O=old, HS=humongous(starts), HC=humongous(continues), CS=collection set, F=free, OA=open archive, CA=closed archive, TAMS=top-at-mark-start (previous, next)
-| 0|0x00000007e0000000, 0x00000007e00b3090, 0x00000007e0100000| 69%| O| |TAMS 0x00000007e00b3090, 0x00000007e0000000| Untracked
-| 1|0x00000007e0100000, 0x00000007e01ffff0, 0x00000007e0200000| 99%| O| |TAMS 0x00000007e01ffff0, 0x00000007e0100000| Untracked
-| 2|0x00000007e0200000, 0x00000007e0203e20, 0x00000007e0300000| 1%| O| |TAMS 0x00000007e0203e20, 0x00000007e0200000| Complete
-| 3|0x00000007e0300000, 0x00000007e0400000, 0x00000007e0400000|100%|HS| |TAMS 0x00000007e0400000, 0x00000007e0300000| Complete
-| 4|0x00000007e0400000, 0x00000007e0500000, 0x00000007e0500000|100%|HS| |TAMS 0x00000007e0500000, 0x00000007e0400000| Complete
-| 5|0x00000007e0500000, 0x00000007e0600000, 0x00000007e0600000|100%|HS| |TAMS 0x00000007e0600000, 0x00000007e0500000| Complete
-| 6|0x00000007e0600000, 0x00000007e06c4200, 0x00000007e0700000| 76%| O| |TAMS 0x00000007e0600000, 0x00000007e0600000| Untracked
-| 7|0x00000007e0700000, 0x00000007e0800000, 0x00000007e0800000|100%|HS| |TAMS 0x00000007e0700000, 0x00000007e0700000| Complete
-| 8|0x00000007e0800000, 0x00000007e0800000, 0x00000007e0900000| 0%| F| |TAMS 0x00000007e0800000, 0x00000007e0800000| Untracked
-| 9|0x00000007e0900000, 0x00000007e0900000, 0x00000007e0a00000| 0%| F| |TAMS 0x00000007e0900000, 0x00000007e0900000| Untracked
-| 10|0x00000007e0a00000, 0x00000007e0a00000, 0x00000007e0b00000| 0%| F| |TAMS 0x00000007e0a00000, 0x00000007e0a00000| Untracked
-| 11|0x00000007e0b00000, 0x00000007e0b00000, 0x00000007e0c00000| 0%| F| |TAMS 0x00000007e0b00000, 0x00000007e0b00000| Untracked
-| 12|0x00000007e0c00000, 0x00000007e0c00000, 0x00000007e0d00000| 0%| F| |TAMS 0x00000007e0c00000, 0x00000007e0c00000| Untracked
-| 13|0x00000007e0d00000, 0x00000007e0d00f70, 0x00000007e0e00000| 0%| S|CS|TAMS 0x00000007e0d00000, 0x00000007e0d00000| Complete
-| 14|0x00000007e0e00000, 0x00000007e0e00000, 0x00000007e0f00000| 0%| F| |TAMS 0x00000007e0e00000, 0x00000007e0e00000| Untracked
-| 15|0x00000007e0f00000, 0x00000007e1000000, 0x00000007e1000000|100%| E|CS|TAMS 0x00000007e0f00000, 0x00000007e0f00000| Complete
-| 16|0x00000007e1000000, 0x00000007e1000000, 0x00000007e1100000| 0%| F| |TAMS 0x00000007e1000000, 0x00000007e1000000| Untracked
-| 17|0x00000007e1100000, 0x00000007e1100000, 0x00000007e1200000| 0%| F| |TAMS 0x00000007e1100000, 0x00000007e1100000| Untracked
-| 18|0x00000007e1200000, 0x00000007e1200000, 0x00000007e1300000| 0%| F| |TAMS 0x00000007e1200000, 0x00000007e1200000| Untracked
-| 19|0x00000007e1300000, 0x00000007e136e288, 0x00000007e1400000| 43%| E| |TAMS 0x00000007e1300000, 0x00000007e1300000| Complete
-| 231|0x00000007ee700000, 0x00000007ee800000, 0x00000007ee800000|100%| O| |TAMS 0x00000007ee800000, 0x00000007ee700000| Untracked
-| 232|0x00000007ee800000, 0x00000007ee900000, 0x00000007ee900000|100%| O| |TAMS 0x00000007ee900000, 0x00000007ee800000| Untracked
-| 510|0x00000007ffe00000, 0x00000007ffe78000, 0x00000007fff00000| 46%|OA| |TAMS 0x00000007ffe78000, 0x00000007ffe00000| Untracked
-| 511|0x00000007fff00000, 0x00000007fff80000, 0x0000000800000000| 50%|CA| |TAMS 0x00000007fff80000, 0x00000007fff00000| Untracked
-
-Card table byte_map: [0x000000010c100000,0x000000010c200000] _byte_map_base: 0x0000000108200000
-
-Marking Bits (Prev, Next): (CMBitMap*) 0x000000011f7a4410, (CMBitMap*) 0x000000011f7a4450
- Prev Bits: [0x000000010f800000, 0x0000000110000000)
- Next Bits: [0x0000000118000000, 0x0000000118800000)
-
-Polling page: 0x000000010507c000
-
-Metaspace:
-
-Usage:
- Non-class: 8.15 MB used.
- Class: 1004.40 KB used.
- Both: 9.14 MB used.
-
-Virtual space:
- Non-class space: 16.00 MB reserved, 8.19 MB ( 51%) committed, 2 nodes.
- Class space: 1.00 GB reserved, 1.06 MB ( <1%) committed, 1 nodes.
- Both: 1.02 GB reserved, 9.25 MB ( <1%) committed.
-
-Chunk freelists:
- Non-Class: 3.81 MB
- Class: 2.95 MB
- Both: 6.77 MB
-
-MaxMetaspaceSize: unlimited
-CompressedClassSpaceSize: 1.00 GB
-Initial GC threshold: 21.00 MB
-Current GC threshold: 21.00 MB
-CDS: on
-MetaspaceReclaimPolicy: balanced
- - commit_granule_bytes: 65536.
- - commit_granule_words: 8192.
- - virtual_space_node_default_size: 1048576.
- - enlarge_chunks_in_place: 1.
- - new_chunks_are_fully_committed: 0.
- - uncommit_free_chunks: 1.
- - use_allocation_guard: 0.
- - handle_deallocations: 1.
-
-
-Internal statistics:
-
-num_allocs_failed_limit: 0.
-num_arena_births: 38.
-num_arena_deaths: 0.
-num_vsnodes_births: 3.
-num_vsnodes_deaths: 0.
-num_space_committed: 148.
-num_space_uncommitted: 0.
-num_chunks_returned_to_freelist: 0.
-num_chunks_taken_from_freelist: 163.
-num_chunk_merges: 0.
-num_chunk_splits: 97.
-num_chunks_enlarged: 61.
-num_purges: 0.
-num_inconsistent_stats: 0.
-
-CodeHeap 'non-profiled nmethods': size=120032Kb used=697Kb max_used=697Kb free=119334Kb
- bounds [0x000000014f4dc000, 0x000000014f74c000, 0x0000000156a14000]
-CodeHeap 'profiled nmethods': size=120016Kb used=3427Kb max_used=3427Kb free=116588Kb
- bounds [0x0000000147fa8000, 0x0000000148308000, 0x000000014f4dc000]
-CodeHeap 'non-nmethods': size=5712Kb used=1180Kb max_used=1235Kb free=4531Kb
- bounds [0x0000000147a14000, 0x0000000147c84000, 0x0000000147fa8000]
- total_blobs=2051 nmethods=1560 adapters=408
- compilation: enabled
- stopped_count=0, restarted_count=0
- full_count=0
-
-Compilation events (20 events):
-Event: 23.905 Thread 0x000000011b6e6a00 1552 4 java.util.concurrent.locks.AbstractQueuedSynchronizer::signalNext (34 bytes)
-Event: 23.905 Thread 0x000000011b6e6a00 nmethod 1552 0x000000014f586490 code [0x000000014f586600, 0x000000014f5866b0]
-Event: 23.907 Thread 0x000000011cc09200 1553 3 org.postgresql.jdbc.PgResultSet::next (259 bytes)
-Event: 23.907 Thread 0x000000011b6e6a00 1554 4 org.postgresql.jdbc.PgResultSet::checkClosed (29 bytes)
-Event: 23.907 Thread 0x000000010cac2200 1555 4 org.postgresql.util.internal.Nullness::castNonNull (39 bytes)
-Event: 23.907 Thread 0x000000011b6e6a00 nmethod 1554 0x000000014f586790 code [0x000000014f586900, 0x000000014f5869b0]
-Event: 23.907 Thread 0x000000010cac2200 nmethod 1555 0x000000014f586a90 code [0x000000014f586c00, 0x000000014f586c60]
-Event: 23.907 Thread 0x000000011b6e6a00 1556 ! 4 jdk.internal.math.FloatingDecimal::readJavaFormatString (826 bytes)
-Event: 23.907 Thread 0x000000010cac2200 1557 ! 4 org.postgresql.jdbc.PgResultSet::getLong (121 bytes)
-Event: 23.907 Thread 0x000000011cc09200 nmethod 1553 0x00000001482ff110 code [0x00000001482ff480, 0x00000001483006a8]
-Event: 23.912 Thread 0x000000010cac2200 nmethod 1557 0x000000014f586d90 code [0x000000014f587000, 0x000000014f587770]
-Event: 23.912 Thread 0x000000010cac2200 1558 4 java.lang.StringLatin1::trim (76 bytes)
-Event: 23.912 Thread 0x000000010cac2200 nmethod 1558 0x000000014f587d90 code [0x000000014f587f40, 0x000000014f588070]
-Event: 23.916 Thread 0x000000011b6e6a00 nmethod 1556 0x000000014f588190 code [0x000000014f588440, 0x000000014f589080]
-Event: 23.937 Thread 0x000000010cac2200 1559 4 java.nio.HeapByteBuffer::putLong (32 bytes)
-Event: 23.937 Thread 0x000000011b6e6a00 1560 4 java.nio.HeapByteBuffer::getDouble (35 bytes)
-Event: 23.937 Thread 0x000000010cac2200 nmethod 1559 0x000000014f589990 code [0x000000014f589b40, 0x000000014f589ce0]
-Event: 23.937 Thread 0x000000011b6e6a00 nmethod 1560 0x000000014f589e90 code [0x000000014f58a040, 0x000000014f58a1a0]
-Event: 45.448 Thread 0x000000011cc09200 1561 1 org.postgresql.core.QueryExecutorBase::isClosed (5 bytes)
-Event: 45.448 Thread 0x000000011cc09200 nmethod 1561 0x000000014f58a390 code [0x000000014f58a500, 0x000000014f58a5e8]
-
-GC Heap History (20 events):
-Event: 9.766 GC heap before
-{Heap before GC invocations=8 (full 2):
- garbage-first heap total 35840K, used 20680K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 9 young (9216K), 0 survivors (0K)
- Metaspace used 9266K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.767 GC heap after
-{Heap after GC invocations=9 (full 2):
- garbage-first heap total 35840K, used 21683K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 2 young (2048K), 2 survivors (2048K)
- Metaspace used 9266K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.861 GC heap before
-{Heap before GC invocations=9 (full 2):
- garbage-first heap total 35840K, used 23731K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 4 young (4096K), 2 survivors (2048K)
- Metaspace used 9293K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.862 GC heap after
-{Heap after GC invocations=10 (full 2):
- garbage-first heap total 149504K, used 21468K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 1 young (1024K), 1 survivors (1024K)
- Metaspace used 9293K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.862 GC heap before
-{Heap before GC invocations=10 (full 2):
- garbage-first heap total 149504K, used 21468K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 2 young (2048K), 1 survivors (1024K)
- Metaspace used 9293K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.866 GC heap after
-{Heap after GC invocations=11 (full 3):
- garbage-first heap total 48128K, used 12544K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9293K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.945 GC heap before
-{Heap before GC invocations=11 (full 3):
- garbage-first heap total 48128K, used 13568K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 0 survivors (0K)
- Metaspace used 9305K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 9.949 GC heap after
-{Heap after GC invocations=12 (full 4):
- garbage-first heap total 48128K, used 12554K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9305K, committed 9472K, reserved 1064960K
- class space used 1002K, committed 1088K, reserved 1048576K
-}
-Event: 10.626 GC heap before
-{Heap before GC invocations=12 (full 4):
- garbage-first heap total 48128K, used 14602K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 0 survivors (0K)
- Metaspace used 9327K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 10.630 GC heap after
-{Heap after GC invocations=13 (full 5):
- garbage-first heap total 20480K, used 4212K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9327K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 19.612 GC heap before
-{Heap before GC invocations=13 (full 5):
- garbage-first heap total 20480K, used 6260K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 0 survivors (0K)
- Metaspace used 9329K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 19.618 GC heap after
-{Heap after GC invocations=14 (full 6):
- garbage-first heap total 20480K, used 4145K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9329K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.636 GC heap before
-{Heap before GC invocations=14 (full 6):
- garbage-first heap total 20480K, used 6193K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 0 survivors (0K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.639 GC heap after
-{Heap after GC invocations=15 (full 7):
- garbage-first heap total 20480K, used 4155K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.871 GC heap before
-{Heap before GC invocations=15 (full 7):
- garbage-first heap total 20480K, used 8251K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 3 young (3072K), 0 survivors (0K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.876 GC heap after
-{Heap after GC invocations=16 (full 8):
- garbage-first heap total 20480K, used 4795K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 0 young (0K), 0 survivors (0K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.876 GC heap before
-{Heap before GC invocations=16 (full 8):
- garbage-first heap total 20480K, used 6843K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 1 young (1024K), 0 survivors (0K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.876 GC heap after
-{Heap after GC invocations=17 (full 8):
- garbage-first heap total 20480K, used 7617K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 1 young (1024K), 1 survivors (1024K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.876 GC heap before
-{Heap before GC invocations=17 (full 8):
- garbage-first heap total 20480K, used 8641K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 2 young (2048K), 1 survivors (1024K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-Event: 23.877 GC heap after
-{Heap after GC invocations=18 (full 8):
- garbage-first heap total 20480K, used 8656K [0x00000007e0000000, 0x0000000800000000)
- region size 1024K, 1 young (1024K), 1 survivors (1024K)
- Metaspace used 9330K, committed 9472K, reserved 1064960K
- class space used 1003K, committed 1088K, reserved 1048576K
-}
-
-Dll operation events (8 events):
-Event: 0.004 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libjava.dylib
-Event: 0.025 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libnio.dylib
-Event: 0.026 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libzip.dylib
-Event: 3.973 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libjimage.dylib
-Event: 4.013 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libnet.dylib
-Event: 4.076 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libextnet.dylib
-Event: 4.083 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libmanagement.dylib
-Event: 4.084 Loaded shared library /Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/libmanagement_ext.dylib
-
-Deoptimization events (20 events):
-Event: 9.898 Thread 0x000000011e307600 DEOPT PACKING pc=0x00000001481e45fc sp=0x000000016bc2a950
-Event: 9.898 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52b7c sp=0x000000016bc2a6c0 mode 0
-Event: 9.949 Thread 0x000000011e307600 DEOPT PACKING pc=0x0000000148287a14 sp=0x000000016bc1e4c0
-Event: 9.949 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52b7c sp=0x000000016bc1e160 mode 0
-Event: 10.061 Thread 0x000000011e307600 Uncommon trap: trap_request=0xffffff45 fr.pc=0x000000014f556890 relative=0x0000000000000390
-Event: 10.061 Thread 0x000000011e307600 Uncommon trap: reason=unstable_if action=reinterpret pc=0x000000014f556890 method=java.nio.Buffer.(IIIILjdk/internal/access/foreign/MemorySegmentProxy;)V @ 50 c2
-Event: 10.061 Thread 0x000000011e307600 DEOPT PACKING pc=0x000000014f556890 sp=0x000000016bc2bc10
-Event: 10.061 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52d1c sp=0x000000016bc2baf0 mode 2
-Event: 10.162 Thread 0x000000011e307600 DEOPT PACKING pc=0x00000001481a215c sp=0x000000016bc2c0c0
-Event: 10.162 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52b7c sp=0x000000016bc2bd60 mode 0
-Event: 10.281 Thread 0x000000011e307600 Uncommon trap: trap_request=0xffffffde fr.pc=0x000000014f540b04 relative=0x0000000000000184
-Event: 10.281 Thread 0x000000011e307600 Uncommon trap: reason=class_check action=maybe_recompile pc=0x000000014f540b04 method=java.util.regex.Pattern$BmpCharProperty.match(Ljava/util/regex/Matcher;ILjava/lang/CharSequence;)Z @ 19 c2
-Event: 10.281 Thread 0x000000011e307600 DEOPT PACKING pc=0x000000014f540b04 sp=0x000000016bc2cd00
-Event: 10.281 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52d1c sp=0x000000016bc2cc90 mode 2
-Event: 10.281 Thread 0x000000011e307600 Uncommon trap: trap_request=0xffffffde fr.pc=0x000000014f540b04 relative=0x0000000000000184
-Event: 10.281 Thread 0x000000011e307600 Uncommon trap: reason=class_check action=maybe_recompile pc=0x000000014f540b04 method=java.util.regex.Pattern$BmpCharProperty.match(Ljava/util/regex/Matcher;ILjava/lang/CharSequence;)Z @ 19 c2
-Event: 10.281 Thread 0x000000011e307600 DEOPT PACKING pc=0x000000014f540b04 sp=0x000000016bc2cd00
-Event: 10.281 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52d1c sp=0x000000016bc2cc90 mode 2
-Event: 23.883 Thread 0x000000011e307600 DEOPT PACKING pc=0x0000000148297d44 sp=0x000000016bc2be30
-Event: 23.883 Thread 0x000000011e307600 DEOPT UNPACKING pc=0x0000000147a52b7c sp=0x000000016bc2bb40 mode 3
-
-Classes unloaded (0 events):
-No events
-
-Classes redefined (0 events):
-No events
-
-Internal exceptions (20 events):
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb25268)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb258d8)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb25f48)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb26618)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb26c88)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb272f8)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 8.723 Thread 0x000000011e307600 Exception (0x00000007efb279c8)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afcc10)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afd2e0)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afd950)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afe020)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afe690)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.062 Thread 0x000000011e307600 Exception (0x00000007e2afed00)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2aff3d0)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2affa40)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2961388)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2961a58)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e29620c8)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2962738)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-Event: 10.063 Thread 0x000000011e307600 Exception (0x00000007e2962e08)
-thrown [src/hotspot/share/prims/jni.cpp, line 516]
-
-VM Operations (20 events):
-Event: 9.945 Executing VM operation: G1CollectFull
-Event: 9.949 Executing VM operation: G1CollectFull done
-Event: 10.626 Executing VM operation: G1CollectFull
-Event: 10.630 Executing VM operation: G1CollectFull done
-Event: 19.612 Executing VM operation: G1CollectFull
-Event: 19.618 Executing VM operation: G1CollectFull done
-Event: 23.632 Executing VM operation: Cleanup
-Event: 23.632 Executing VM operation: Cleanup done
-Event: 23.636 Executing VM operation: G1CollectFull
-Event: 23.639 Executing VM operation: G1CollectFull done
-Event: 23.871 Executing VM operation: G1CollectFull
-Event: 23.876 Executing VM operation: G1CollectFull done
-Event: 23.876 Executing VM operation: G1TryInitiateConcMark
-Event: 23.876 Executing VM operation: G1TryInitiateConcMark done
-Event: 23.876 Executing VM operation: G1TryInitiateConcMark
-Event: 23.877 Executing VM operation: G1TryInitiateConcMark done
-Event: 23.879 Executing VM operation: G1Concurrent
-Event: 23.880 Executing VM operation: G1Concurrent done
-Event: 23.881 Executing VM operation: G1Concurrent
-Event: 23.881 Executing VM operation: G1Concurrent done
-
-Events (20 events):
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater done
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater$AtomicReferenceFieldUpdaterImpl
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater$AtomicReferenceFieldUpdaterImpl done
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater$AtomicReferenceFieldUpdaterImpl$1
-Event: 8.863 loading class java/util/concurrent/atomic/AtomicReferenceFieldUpdater$AtomicReferenceFieldUpdaterImpl$1 done
-Event: 8.863 loading class sun/reflect/misc/ReflectUtil
-Event: 8.863 loading class sun/reflect/misc/ReflectUtil done
-Event: 8.882 loading class java/io/CharArrayReader
-Event: 8.882 loading class java/io/CharArrayReader done
-Event: 8.882 loading class java/net/UnknownHostException
-Event: 8.882 loading class java/net/UnknownHostException done
-Event: 9.638 loading class jdk/internal/access/foreign/MemorySegmentProxy
-Event: 9.638 loading class jdk/internal/access/foreign/MemorySegmentProxy done
-Event: 23.883 Thread 0x000000011b6e6a00 Thread added: 0x000000011b6e6a00
-Event: 23.883 Protecting memory [0x000000016facc000,0x000000016fad8000] with protection modes 0
-Event: 23.905 loading class java/util/concurrent/locks/AbstractQueuedSynchronizer$Node
-Event: 23.905 loading class java/util/concurrent/locks/AbstractQueuedSynchronizer$Node done
-Event: 28.942 Protecting memory [0x000000016facc000,0x000000016fad8000] with protection modes 3
-Event: 28.943 Thread 0x000000011b6e6a00 Thread exited: 0x000000011b6e6a00
-
-
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-0x00000001a2b50000 /System/Library/Frameworks/LocalAuthentication.framework/Versions/A/LocalAuthentication
-0x00000001958d6000 /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
-0x0000000238462000 /System/Library/PrivateFrameworks/LocalAuthenticationCore.framework/Versions/A/LocalAuthenticationCore
-0x00000001a2b9b000 /System/Library/Frameworks/LocalAuthentication.framework/Support/SharedUtils.framework/Versions/A/SharedUtils
-0x00000001a2aeb000 /System/Library/Frameworks/CryptoTokenKit.framework/Versions/A/CryptoTokenKit
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-
-
-VM Arguments:
-jvm_args: -Djava.awt.headless=true -Xmx512m -Xrs vfprintf exit -Xss2m
-java_command:
-java_class_path (initial): /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/rJava/java/boot
-Launcher Type: generic
-
-[Global flags]
- intx CICompilerCount = 4 {product} {ergonomic}
- uint ConcGCThreads = 2 {product} {ergonomic}
- uint G1ConcRefinementThreads = 8 {product} {ergonomic}
- size_t G1HeapRegionSize = 1048576 {product} {ergonomic}
- uintx GCDrainStackTargetSize = 64 {product} {ergonomic}
- size_t InitialHeapSize = 268435456 {product} {ergonomic}
- size_t MarkStackSize = 4194304 {product} {ergonomic}
- size_t MaxHeapSize = 536870912 {product} {command line}
- size_t MaxNewSize = 321912832 {product} {ergonomic}
- size_t MinHeapDeltaBytes = 1048576 {product} {ergonomic}
- size_t MinHeapSize = 8388608 {product} {ergonomic}
- uintx NonNMethodCodeHeapSize = 5839564 {pd product} {ergonomic}
- uintx NonProfiledCodeHeapSize = 122909338 {pd product} {ergonomic}
- uintx ProfiledCodeHeapSize = 122909338 {pd product} {ergonomic}
- bool ReduceSignalUsage = true {product} {command line}
- uintx ReservedCodeCacheSize = 251658240 {pd product} {ergonomic}
- bool SegmentedCodeCache = true {product} {ergonomic}
- size_t SoftMaxHeapSize = 536870912 {manageable} {ergonomic}
- intx ThreadStackSize = 2048 {pd product} {command line}
- bool UseCompressedClassPointers = true {product lp64_product} {ergonomic}
- bool UseCompressedOops = true {product lp64_product} {ergonomic}
- bool UseG1GC = true {product} {ergonomic}
- bool UseNUMA = false {product} {ergonomic}
- bool UseNUMAInterleaving = false {product} {ergonomic}
-
-Logging:
-Log output configuration:
- #0: stdout all=warning uptime,level,tags
- #1: stderr all=off uptime,level,tags
-
-Environment Variables:
-PATH=/Library/Frameworks/Python.framework/Versions/3.11/bin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/TeX/texbin:/Users/jreps/Applications/quarto/bin:/usr/ucb:/Applications/quarto/bin:/usr/texbin:/Applications/RStudio.app/Contents/Resources/app/bin/postback:/Applications/RStudio.app/Contents/Resources/app/bin/postback:/Applications/RStudio.app/Contents/Resources/app/bin/postback:/Applications/RStudio.app/Contents/Resources/app/bin/postback
-SHELL=/bin/zsh
-DISPLAY=:0
-LANG=en_US.UTF-8
-LC_CTYPE=en_US.UTF-8
-TERM=xterm-256color
-TMPDIR=/var/folders/68/4qxz0vzd2z1dt6bvj379jwl80000gp/T/
-DYLD_LIBRARY_PATH=/Library/Java/JavaVirtualMachines/amazon-corretto-17.jdk/Contents/Home/lib/server
-DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib:/Library/Java/JavaVirtualMachines/jdk-17.0.1+12/Contents/Home/lib/server:/var/folders/68/4qxz0vzd2z1dt6bvj379jwl80000gp/T/rstudio-fallback-library-path-1123487826
-
-Signal Handlers:
- SIGSEGV: crash_handler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGBUS: crash_handler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGFPE: crash_handler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGPIPE: javaSignalHandler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGXFSZ: javaSignalHandler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGILL: crash_handler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
- SIGUSR2: SIG_IGN, mask=00000000000000000000000000000000, flags=none
- *** Handler was modified!
- *** Expected: SR_handler in libjvm.dylib, mask=11000000000000000000000000000000, flags=SA_RESTART|SA_SIGINFO
- SIGHUP: SIG_DFL, mask=00000000000000000000000000000000, flags=none
- SIGINT: rstudio_boost::asio::detail::reactive_socket_accept_op_base, rstudio_boost::asio::ip::tcp>::do_perform+620944 in rsession-arm64, mask=00000000000000000000000000000000, flags=SA_RESTART
- SIGTERM: SIG_DFL, mask=00000000000000000000000000000000, flags=none
- SIGQUIT: SIG_DFL, mask=00000000000000000000000000000000, flags=none
- SIGTRAP: crash_handler in libjvm.dylib, mask=11100110000111110111111111111111, flags=SA_RESTART|SA_SIGINFO
-
-
---------------- S Y S T E M ---------------
-
-OS:
-uname: Darwin 23.5.0 Darwin Kernel Version 23.5.0: Wed May 1 20:12:58 PDT 2024; root:xnu-10063.121.3~5/RELEASE_ARM64_T6000 arm64
-OS uptime: 0 days 9:23 hours
-rlimit (soft/hard): STACK 8176k/65520k , CORE 0k/infinity , NPROC 2666/4000 , NOFILE 12544/infinity , AS infinity/infinity , CPU infinity/infinity , DATA infinity/infinity , FSIZE infinity/infinity , MEMLOCK infinity/infinity , RSS infinity/infinity
-load average: 2.40 2.95 4.51
-
-CPU: total 8 (initial active 8) 0x61:0x0:0x1b588bb3:0, fp, simd, crc, lse
-
-Memory: 16k page, physical 16777216k(758240k free), swap 0k(0k free)
-
-vm_info: OpenJDK 64-Bit Server VM (17.0.5+8-LTS) for bsd-aarch64 JRE (17.0.5+8-LTS), built on Oct 13 2022 05:06:05 by "ec2user" with clang Apple LLVM 13.0.0 (clang-1300.0.29.30)
-
-END.