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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>portfolio</title>
<link rel="stylesheet" href="styles.css">
<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.15.3/css/all.css"
integrity="sha384-SZXxX4whJ79/gErwcOYf+zWLeJdY/qpuqC4cAa9rOGUstPomtqpuNWT9wdPEn2fk" crossorigin="anonymous">
</head>
<body>
<div class="wrapper">
<header>
<nav class="navbar" id="homee">
<div class="brand">
<h2>S.<span>Olmos</span></h2>
</div>
<ul class="menu">
<li><a class="active" href="#homee">Home</a></li>
<li><a href="#aboutt">About me</a></li>
<li><a href="#portfolioo">Portfolio</a></li>
<li><a href="#Contact">Contact</a></li>
</ul>
<div class="toggle-menu">
<i class="fas fa-bars" id="toggle_open"></i>
<i class="fas fa-close" id="toggle_close"></i>
</div>
</nav>
</header>
<main class="main">
<div class="info-content">
<span class="info-content_subtitle">Bioinformatician</span>
<h1>I'm <span>Sergio </span>Olmos</h1>
<h3 class="subtitle"> Bioinformatician</h3>
<p class="info-p">I collaborate at the Foundation for Biomedical Research of the Ramón y Cajal
University Hospital.
I am working on my doctoral thesis on the development of a biomarker peptide search platform.
</p>
<p class="info-p">"Every man can be, if he sets his mind to it, a sculptor of his own brain."
</p>
<p class="info-p2">Ramón y Cajal
</p>
<a download="" href="./CV_Olmos.pdf">
<button class="download-cv">Download CV</button>
</a>
</div>
<img src="./imag/IMG-20221217-WA0023.jpg" alt="">
</main>
</div>
<div class="about" id="aboutt">
<img src="./imag/IMG-20230203-WA0025.jpg" alt="">
<div class="aboutinfo">
<h2>About me</h2>
<div class="divider"></div>
<h1>My name is Sergio, I graduated in environmental sciences at the University of Alcalá, where I
specialized in environmental microbiology.
Finally I did a master's degree in bioinformatics at the European University doing my final project in
the field of metagenomics and artificial intelligence applied to biomedicine. </h1>
<h1>I seek to apply my skills in bioinformatics and data analysis to contribute to the advancement of
biomedical research. My goal is to use machine learning and statistical analysis techniques to identify
biomarkers and detect contamination in prokaryotic gene sequences, contributing to the improvement of
diagnostics and therapies. With experience in bioinformatics software development and clinical database
management, I aspire to collaborate in projects that advance the understanding and treatment of diseases
through cutting-edge research.</h1>
<div class="skills">
<div class="skill">
<div class="skill-name"> Python
<div class="skill-bar">
<div class="skill-per" per="75%" style="max-width:75%;"></div>
</div>
</div>
</div>
<div class="skill">
<div class="skill-name"> R
<div class="skill-bar">
<div class="skill-per" per="90%" style="max-width:90%;"></div>
</div>
</div>
</div>
<div class="skill">
<div class="skill-name"> html
<div class="skill-bar">
<div class="skill-per" per="60%" style="max-width:60%;"></div>
</div>
</div>
</div>
<div class="skill">
<div class="skill-name"> css
<div class="skill-bar">
<div class="skill-per" per="60%" style="max-width:60%;"></div>
</div>
</div>
</div>
<div class="skill">
<div class="skill-name"> sql
<div class="skill-bar">
<div class="skill-per" per="65%" style="max-width:65%;"></div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="portfolio" id="portfolioo">
<div class="portfolio-heads">
<h2>Projects</h2>
<div class="divider">
</div>
<div class="container">
<div class="card">
<div class="slider">
<img src="./imag/DCF1.png" alt="">
<img src="./imag/DCF3.png" alt="">
<img src="./imag/DCF4.png" alt="">
<img src="./imag/DCF5.png" alt="">
</div>
<div class="card-title">
<h2>DeepClone Finder</h2>
</div>
<p>DeepClone Finder addresses the analysis of synthetic bacterial communities to obtain an algorithm
capable of estimating the relative abundance and the number of clones present for a specific
gene using neural networks (Deep Learning). For this purpose, a bacterial community simulator
will be developed and used to obtain predictive algorithms of different complexity.</p>
<div class="projects-links">
<div class="button">
<input type="button" value="Development">
</div>
<div class="button">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button_a">
<input type="button" value="Published">
</div>
</div>
<div class="projects-links">
<a href="https://github.com/OPSergio/DeepCloneFinder" target="_blank">
<i class="fab fa-github"></i>
</a>
<a href="">
<i class="fab fa-python"></i>
</a>
</div>
</div>
<div class="card">
<div class="slider">
<img src="./imag/HN0.png" alt="">
<img src="./imag/HN1.jpg" alt="">
<img src="./imag/HN2.png" alt="">
<img src="./imag/HN3.png" alt="">
<img src="./imag/HN4.png" alt="">
<img src="./imag/HN5.png" alt="">
<img src="./imag/HN6.png" alt="">
<img src="./imag/HN7.png" alt="">
</div>
<div class="card-title">
<h2>HealthNut Study</h2>
</div>
<p>The objective of the project is the search for prognostic and diagnostic biomarker peptides in
the response to immunotherapy.
For this purpose, proteomic information, IgE and IgG4 expression arrays are used.
A reduction of variables was carried out since initially there were >400 predictor variables and
the ideal algorithm for patient classification was selected.
Finally, the hyperparameters were tuned and validated.</p>
<div class="projects-links">
<div class="button">
<input type="button" value="Development">
</div>
<div class="button_a">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button">
<input type="button" value="Published">
</div>
</div>
</div>
<div class="card">
<div class="slider">
<img src="./imag/Microb.png" alt="">
<img src="./imag/Microb1.png" alt="">
<img src="./imag/Microb3.png" alt="">
</div>
<div class="card-title">
<h2>Microbiome</h2>
</div>
<p> The aim of the Microbiome project was to develop an algorithm capable of classifying patients
admitted for pulmonary thromboembolism according to microbiome-related variables. Initially, a
permuted multivariate analysis of variance (PERMANOVA) was performed, a model similar to MANOVA,
the difference being the use of distance matrices. The results obtained prompted the search for
an extension of the patient database to continue with the development of the project.
</p>
<div class="projects-links">
<div class="button_a">
<input type="button" value="Development">
</div>
<div class="button">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button">
<input type="button" value="Published">
</div>
</div>
</div>
</div>
<div class="container">
<div class="card">
<div class="slider">
<img src="./imag/SOC6.png" alt="">
<img src="./imag/SOC5.jpg" alt="">
<img src="./imag/SOC2.jpg" alt="">
<img src="./imag/SOC3.jpg" alt="">
<img src="./imag/SOC4.jpg" alt="">
<img src="./imag/SOC.png" alt="">
<img src="./imag/SOC1.png" alt="">
</div>
<div class="card-title">
<h2>SXCMX</h2>
</div>
<p>The SXCMX project evaluates the efficacy and safety of an experimental immunotherapy treatment.
My work is focused on statistical and differential expression analysis of immunoglobulins
(IgE/IgG4) in peptide arrays.
I am developing tools for the determination and visualization of linear epitopes. </p>
<div class="projects-links">
<div class="button">
<input type="button" value="Development">
</div>
<div class="button_a">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button">
<input type="button" value="Published">
</div>
</div>
</div>
<div class="card">
<div class="slider">
<img src="./imag/OVALE2.png" alt="">
<img src="./imag/OVALE1.png" alt="">
<img src="./imag/analisis_peptidos.png" alt="">
<img src="./imag/c50.png" alt="">
</div>
<div class="card-title">
<h2>Ovale</h2>
</div>
<p>Ovale consists of a cohort of patients who have been followed up during immunotherapy treatment.
Based on the information collected and the tests performed, the aim is to obtain an algorithm
based on the regions of the protein that are recognized by the patients whose immunotherapy
success has been greater. </p>
<div class="projects-links">
<div class="button_a">
<input type="button" value="Development">
</div>
<div class="button">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button">
<input type="button" value="Published">
</div>
</div>
</div>
<div class="card">
<div class="slider">
<img src="./imag/COS2.png" alt="">
<img src="./imag/COS1.png" alt="">
<img src="./imag/COS3.png" alt="">
</div>
<div class="card-title">
<h2>Core Outcome Sets</h2>
</div>
<p> The aim is to make an outcomes recommendation based on a literature search of more than 100
articles that employ a wide variety of outcomes for the evaluation of a clinical intervention.
This would facilitate the extraction of information for the development of a meta-analysis.
My proposal is based on clustering of outcomes using binary distances and graphical methods to
establish significance, combined with data mining techniques such as association rules and the
Apriori algorithm.
</p>
<div class="projects-links">
<div class="button_a">
<input type="button" value="Development">
</div>
<div class="button">
<input class= "button" type="button" value="Redaction">
</div>
<div class="button">
<input type="button" value="Published">
</div>
</div>
</div>
</div>
<p class="Note">Note: The bioinformatics and biostatistical development of the submitted projects has been entirely carried out
by me.
Code cannot be published since they are under development and are confidential. </p>
</div>
</div>
<div class="container-cs" id="Contact">
<div class="content-cs">
<div class="left-side">
<div class="address details">
<i class="fas fa-map-marker-alt"></i>
<div class="topic">
<h4>Address</h4>
</div>
<div class="text-one">
<h5>C/Laviana nº9</h5>
</div>
<div class="text-two">
<h5>28037 Madrid</h5>
</div>
</div>
<div class="email details">
<i class="fas fa-envelope"></i>
<div class="topic">
<h4>email</h4>
</div>
<div class="text-one">
<h5>[email protected]</h5>
</div>
<div class="text-two">
<h5>[email protected]</h5>
</div>
</div>
<div class="phone details">
<i class="fas fa-phone-alt"></i>
<div class="topic">
<h4>Phone</h4>
</div>
<div class="text-one">
<h5>+34 603317295</h5>
</div>
<div class="text-two">
<h5>+34 685008983</h5>
</div>
</div>
</div>
<div class="rigth-side">
<div class="topic-text">
</div>
<form action="#">
<div class="input-box">
<input type="text" placeholder="Enter your name">
</div>
<div class="input-box">
<input type="text" placeholder="Enter your email">
</div>
<div class="input-box message-box">
<textarea cols="50" rows="8"></textarea>
</div>
<div class="button">
<input type="button" value="Send Now">
</div>
</form>
</div>
</div>
</div>
<div class="final">
<div class="headfinal">
<h2>Sergio Olmos Piñero</h2>
<h4>Bioinformatician-PhD Student</h4>
<a href="https://github.com/OPSergio" target="_blank">
<i class="fab fa-github"></i>
</a>
<a href="https://www.linkedin.com/in/sergio-olmos-pi%C3%B1ero-aa5935213" target="_blank">
<i class="fab fa-linkedin"></i>
</a>
</div>
</div>
</div>
<script src=""></script>
</body>
</html>