relecov-tools Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[1.X.Xdev] - 2024-XX-XX : https://github.com/BU-ISCIII/relecov-tools/releases/tag/1.X.X

Credits

Code contributions to the hotfix:

Modules

Added enhancements

Fixes

Changed

Removed

Requirements

[1.1.0] - 2024-09-13 : https://github.com/BU-ISCIII/relecov-tools/releases/tag/1.1.0

Credits

Code contributions to the hotfix:

Modules

New logs-to-excel function to create an excel file given a list of log-summary.json files #300

Added enhancements

Included a way to extract pango-designation version in read-bioinfo-metadata #299
Now log_summary.py also creates an excel file with the process logs #300
Read-bioinfo-metadata splits files and data by batch of samples #306
Included a sleep time in test_sftp-handle to avoid concurrency check failure #308

Fixes

Fixes in launch_pipeline including creation of samples_id.txt and joined validated json #303
Fixed failing module_tests.yml workflow due to deprecated upload-artifact version #308

Changed

Changed pypi_publish action to publish on every release, no need to push tags #308

Removed

Removed only_samples argument in log_summary.py as it was not used in any module. #300

Requirements

[1.0.0] - 2024-09-02 : https://github.com/BU-ISCIII/relecov-tools/releases/tag/1.0.0

Credits

Code contributions to the inital release: