From 89b5ee63b8b5e040b453d5e3be09bcfe596ea3ba Mon Sep 17 00:00:00 2001
From: plaresmedima <steven.sourbron@googlemail.com>
Date: Tue, 15 Aug 2023 17:57:00 +0100
Subject: [PATCH] add workflows

---
 .github/workflows/documentation.yaml  | 46 +++++++++++++++++++++++++++
 .github/workflows/pytest-actions.yaml | 42 ++++++++++++++++++++++++
 2 files changed, 88 insertions(+)
 create mode 100644 .github/workflows/documentation.yaml
 create mode 100644 .github/workflows/pytest-actions.yaml

diff --git a/.github/workflows/documentation.yaml b/.github/workflows/documentation.yaml
new file mode 100644
index 0000000..f736444
--- /dev/null
+++ b/.github/workflows/documentation.yaml
@@ -0,0 +1,46 @@
+name: Docs
+run-name: "Updating Docs as ${{ github.actor }} has pushed changes to main"
+on:
+  push:
+    branches: 
+    - main
+
+jobs:
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
+      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
+      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
+
+      - name: Check out repository code
+        uses: actions/checkout@v3
+      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
+      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
+
+      - name: Install Python 3.10
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e .[tests,docs]
+
+      - name: Update Sphinx htmls
+        run: |
+          make html
+        working-directory: docs
+
+      - name: Publish to gh-pages
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+        with:
+          publish_branch: gh-pages  # default: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: docs/build/html/
+          force_orphan: true
+
+      - run: echo "Status of job = ${{ job.status }}."
+      
diff --git a/.github/workflows/pytest-actions.yaml b/.github/workflows/pytest-actions.yaml
new file mode 100644
index 0000000..9500ac2
--- /dev/null
+++ b/.github/workflows/pytest-actions.yaml
@@ -0,0 +1,42 @@
+# GitHub Actions Configuration for integrated testing using pytest
+name: Test osipi
+
+on: [push]
+
+jobs:
+  build:
+
+    strategy:
+      matrix:
+         os: [windows-latest, macos-latest, ubuntu-latest]
+      fail-fast: false
+
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+      - name: Set up Java
+        uses: actions/setup-java@v3
+        with:
+          java-version: '11'
+          distribution: 'adopt'
+          architecture: x64
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -r requirements.txt
+      - name: Install osipi
+        run: |
+          python -m pip install -e .[docs]
+          python -m pip install -e .[tests]
+      - name: Test with pytest
+        run: |
+          python -m pip install pytest pytest-cov
+          pytest --junitxml=junit/test-results.xml --cov=dbdicom tests/
+      - name: Upload coverage to Codecov
+        if: runner.os == 'Windows'
+        uses: codecov/codecov-action@v3