rerun linters #422

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/guides/building-and-testing-python

	name: Lint and Test

	on: [ push, pull_request ]

	jobs:
	check-pre-commit-hooks:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout branch
	uses: actions/checkout@v3
	with:
	ref: ${{ env.CHECKOUT_BRANCH }}

	- name: Setup Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.8"

	- uses: pre-commit/[email protected]
	with:
	extra_args: --all-files --verbose

	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [ "3.8", "3.9", "3.10" ]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	# Keep pip below 23.0.1 (vam.whittaker install fails with higher versions, #84)
	python -m pip install --upgrade 'pip<23.0.1'
	pip install flake8 pytest
	# Workaround for vam.whittaker installation issue https://github.com/WFP-VAM/vam.whittaker/issues/4
	pip install numpy==1.23.5 cython
	pip install .[dev]
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	pytest

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