diff --git a/doc/source/tutorial/part06/02_alchemical_dynamics.rst b/doc/source/tutorial/part06/02_alchemical_dynamics.rst index 5b22120d8..9ee68ec1e 100644 --- a/doc/source/tutorial/part06/02_alchemical_dynamics.rst +++ b/doc/source/tutorial/part06/02_alchemical_dynamics.rst @@ -340,14 +340,6 @@ from an ``initial`` value of 2.0 to a ``final`` value of 3.0 via :alt: View of the λ-schedule that sandwiches a standard morph stage between two stages that scale the charge lever. -.. note:: - - Schedules constructed outside of the dynamics simulation do not have - the full set of levers (e.g. torsion_k, dih_scale etc) as - levers are only added as they are needed (hence why only - ``default`` and ``charge`` are shown here). The additional levers - are added when the schedule is added to the simulation. - Once you have created your schedule you can add it via the :meth:`~sire.mol.Dynamics.set_schedule` function of the :class:`~sire.mol.Dynamics` object, e.g. diff --git a/doc/source/tutorial/part06/images/06_02_01.jpg b/doc/source/tutorial/part06/images/06_02_01.jpg index 8674ec7aa..dbac039e3 100644 Binary files a/doc/source/tutorial/part06/images/06_02_01.jpg and b/doc/source/tutorial/part06/images/06_02_01.jpg differ diff --git a/doc/source/tutorial/part06/images/06_02_02.jpg b/doc/source/tutorial/part06/images/06_02_02.jpg index 5618f084b..84a3bfe51 100644 Binary files a/doc/source/tutorial/part06/images/06_02_02.jpg and b/doc/source/tutorial/part06/images/06_02_02.jpg differ diff --git a/doc/source/tutorial/part06/images/06_02_03.jpg b/doc/source/tutorial/part06/images/06_02_03.jpg index 44694b4c6..18fb31625 100644 Binary files a/doc/source/tutorial/part06/images/06_02_03.jpg and b/doc/source/tutorial/part06/images/06_02_03.jpg differ diff --git a/doc/source/tutorial/part06/images/06_02_04.jpg b/doc/source/tutorial/part06/images/06_02_04.jpg index 56af4e349..963302bac 100644 Binary files a/doc/source/tutorial/part06/images/06_02_04.jpg and b/doc/source/tutorial/part06/images/06_02_04.jpg differ