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+pytest-cov = "^4.1.0" +pytest-mock = "^3.11.0" + +# Poetry run commands are configured in [tool.poetry] section +# Use: poetry run pytest + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = ["test_*.py", "*_test.py"] +python_classes = ["Test*"] +python_functions = ["test_*"] +addopts = [ + "--strict-markers", + "--strict-config", + "--cov=chemdfm", + "--cov-report=html:htmlcov", + "--cov-report=xml:coverage.xml", + "--cov-report=term-missing", + "--cov-fail-under=80", + "-v", +] +markers = [ + "unit: Unit tests", + "integration: Integration tests", + "slow: Tests that take a long time to run", +] + +[tool.coverage.run] +source = ["chemdfm"] +branch = true +omit = [ + "tests/*", + "*/conftest.py", + "*/__init__.py", + "*/migrations/*", + "*/venv/*", + "*/.venv/*", +] + +[tool.coverage.report] +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:", +] +show_missing = true +precision = 2 + +[tool.coverage.html] +directory = "htmlcov" + +[tool.coverage.xml] +output = "coverage.xml" \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..cd769f2 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,116 @@ +"""Shared pytest fixtures and configuration.""" + +import os +import tempfile +import shutil +from pathlib import Path +from unittest.mock import Mock, MagicMock +import pytest + + +@pytest.fixture +def temp_dir(): + """Create a temporary directory for test files.""" + temp_path = tempfile.mkdtemp() + yield Path(temp_path) + shutil.rmtree(temp_path) + + +@pytest.fixture +def mock_tokenizer(): + """Mock tokenizer for testing without loading actual model.""" + tokenizer = Mock() + tokenizer.from_pretrained.return_value = tokenizer + tokenizer.batch_decode.return_value = ["test response"] + tokenizer.eos_token_id = 1 + tokenizer.return_value = Mock(input_ids="mock_input_ids", to=Mock(return_value=Mock(input_ids="mock_input_ids"))) + return tokenizer + + +@pytest.fixture +def mock_model(): + """Mock model for testing without loading actual model.""" + model = Mock() + model.from_pretrained.return_value = model + model.generate.return_value = "mock_generated_ids" + model.eval.return_value = None + return model + + +@pytest.fixture +def mock_torch(): + """Mock torch functionality.""" + torch_mock = Mock() + torch_mock.cuda.is_available.return_value = False + torch_mock.float16 = "float16" + return torch_mock + + +@pytest.fixture +def sample_args(): + """Sample argument configuration for testing.""" + args = Mock() + args.model_name_or_path = "test_model" + args.max_new_tokens = 100 + args.do_sample = True + args.temperature = 0.7 + args.top_k = 50 + args.top_p = 0.9 + args.num_beams = 1 + args.num_beam_groups = 1 + args.repetition_penalty = 1.0 + args.max_round = 5 + return args + + +@pytest.fixture +def mock_config(): + """Mock configuration for various test scenarios.""" + config = { + "model_path": "test/model/path", + "device": "cpu", + "max_tokens": 512, + "temperature": 0.1 + } + return config + + +@pytest.fixture(scope="session") +def test_data_dir(): + """Path to test data directory.""" + return Path(__file__).parent / "data" + + +@pytest.fixture +def capture_stdout(monkeypatch): + """Fixture to capture stdout for testing print statements.""" + import io + import sys + + captured_output = io.StringIO() + monkeypatch.setattr(sys, 'stdout', captured_output) + return captured_output + + +@pytest.fixture +def mock_input(monkeypatch): + """Mock input function for interactive testing.""" + inputs = [] + + def mock_input_func(prompt=""): + if inputs: + return inputs.pop(0) + return "/clear" + + monkeypatch.setattr("builtins.input", mock_input_func) + return inputs + + +@pytest.fixture +def clean_environment(monkeypatch): + """Clean environment variables for testing.""" + test_env = {} + for key in os.environ: + if not key.startswith("PYTEST"): + monkeypatch.delenv(key, raising=False) + return test_env \ No newline at end of file diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_infrastructure.py b/tests/test_infrastructure.py new file mode 100644 index 0000000..3fff4e3 --- /dev/null +++ b/tests/test_infrastructure.py @@ -0,0 +1,65 @@ +"""Test to validate the testing infrastructure is working correctly.""" + +import pytest +import os +import sys +from pathlib import Path + + +class TestInfrastructure: + """Validate testing infrastructure setup.""" + + def test_pytest_is_working(self): + """Basic test to ensure pytest is functional.""" + assert True + + def test_fixtures_are_available(self, temp_dir, sample_args): + """Test that custom fixtures are working.""" + assert temp_dir.exists() + assert sample_args.max_new_tokens == 100 + + def test_project_structure_exists(self): + """Test that expected project structure exists.""" + project_root = Path(__file__).parent.parent + assert project_root.exists() + assert (project_root / "pyproject.toml").exists() + assert (project_root / "tests").exists() + assert (project_root / "tests" / "unit").exists() + assert (project_root / "tests" / "integration").exists() + + def test_python_path_includes_project(self): + """Test that the project root is in Python path.""" + project_root = Path(__file__).parent.parent + assert str(project_root) in sys.path or str(project_root.resolve()) in sys.path + + @pytest.mark.unit + def test_unit_marker_works(self): + """Test that unit test marker is working.""" + assert True + + @pytest.mark.integration + def test_integration_marker_works(self): + """Test that integration test marker is working.""" + assert True + + @pytest.mark.slow + def test_slow_marker_works(self): + """Test that slow test marker is working.""" + assert True + + def test_mock_fixtures(self, mock_tokenizer, mock_model): + """Test that mock fixtures are working.""" + assert mock_tokenizer is not None + assert mock_model is not None + + # Test mock behavior + assert mock_tokenizer.batch_decode.return_value == ["test response"] + assert mock_model.generate.return_value == "mock_generated_ids" + + def test_temp_dir_fixture(self, temp_dir): + """Test temporary directory fixture.""" + test_file = temp_dir / "test.txt" + test_file.write_text("test content") + + assert test_file.exists() + assert test_file.read_text() == "test content" \ No newline at end of file diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 0000000..e69de29