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openfn-cd92dd57-9a3c-4318-bdcb-f57a386cf811-spec.yaml
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openfn-cd92dd57-9a3c-4318-bdcb-f57a386cf811-spec.yaml
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name: msf-lime-iraq-main
description: null
credentials:
name: AK Sharepoint
owner: [email protected]
name: MSF DHIS2 UAT
owner: [email protected]
name: OpenFnSharepoint
owner: [email protected]
name: OpenMRS Demo
owner: [email protected]
"[email protected](HTTP)":
name: 'OpenMRS Demo (HTTP)'
owner: [email protected]
name: mtuchi-github-token
owner: [email protected]
workflows:
fetch-metadata-and-generate-opts-json:
name: fetch-metadata-and-generate-opts-json
jobs:
Get-metadata-file-from-Sharepoint:
name: Get metadata file from Sharepoint
adaptor: '@openfn/language-msgraph@latest'
credential: [email protected]
body: |
const toCamelCase = text => {
return text
.toLowerCase()
.replace(/[^a-zA-Z0-9]+(.)/g, (match, chr) => chr.toUpperCase());
};
const sheets = [
'OptionSets',
'F01-MHPSS Baseline',
'F02-MHPSS Follow-up',
'F03-mhGAP Baseline',
'F04-mhGAP Follow-up',
'F05-MHPSS Closure',
];
fn(state => {
state.siteId =
'openfnorg.sharepoint.com,4724a499-afbc-4ded-a371-34ae40bf5d8d,1d20a7d4-a6f1-407c-aa77-76bd47bb0f32';
return state;
});
getDrive(
{
id: $.siteId,
owner: 'sites',
},
'default'
);
getFile('/msf-metadata/LIME EMR - Iraq Metadata - Release 1.xlsx', {
metadata: true,
});
fn(state => {
const itemId = state.data.id;
const driveId = state.drives.default.id;
state.workbookBase = `sites/${state.siteId}/drives/${driveId}/items/${itemId}/workbook`;
return state;
});
each(
sheets,
get(`${$.workbookBase}/worksheets('${$.data}')/usedRange`, {}, state => {
const sheetName = toCamelCase(state.references.at(-1));
console.log('Fetched sheet: ', sheetName);
state[sheetName] = state.data.values;
return state;
})
);
fn(state => {
delete state.data;
delete state.response;
delete state.references;
return state;
});
Map-metadata-file-to-option-set-Json-format:
name: Map metadata file to option-set Json format
adaptor: '@openfn/language-common@latest'
credential: null
body: |
const isValidValue = value => value !== '' && value !== 'NA';
const mapArrayToObject = (item, keys) => {
return item.reduce((acc, value, idx) => {
acc[keys[idx]] = value;
return acc;
}, {});
};
fn(state => {
const { optionsets } = state;
const keys = optionsets[1];
const optsMap = optionsets.slice(2).map(item => mapArrayToObject(item, keys));
state.optionSets = optsMap
.filter(
o =>
isValidValue(o['External ID']) && isValidValue(o['DHIS2 DE full name'])
)
.map(o => {
return {
'value.display - Answers': o['Answers'],
'value.uuid - External ID': o['External ID'],
'DHIS2 DE full name': o['DHIS2 DE full name'],
'DHIS2 DE UID': o['DHIS2 DE UID'],
'OptionSet name': o['OptionSet name'],
'DHIS2 Option Set UID': o['DHIS2 Option Set name'],
'DHIS2 Option name': o['DHIS2 Option name'],
'DHIS2 Option UID': o['DHIS2 Option UID'],
'DHIS2 Option Code': o['DHIS2 Option code'],
};
});
return state;
});
const safeKeyValuePairs = arr => {
if (arr === null || arr === undefined) {
return arr;
}
const mappedArr = arr.slice(2).map(item => mapArrayToObject(item, arr[1]));
try {
return mappedArr
.filter(
o => isValidValue(o['External ID']) && isValidValue(o['DHIS2 DE UID'])
)
.reduce((acc, value) => {
acc[value['DHIS2 DE UID']] = value['External ID'];
return acc;
}, {});
} catch (error) {
console.error(`Error processing ${arr}:`, error);
return arr; // Return original value if processing fails
}
};
fn(
({
optionSets,
f01MhpssBaseline,
f02MhpssFollowUp,
f03MhgapBaseline,
f04MhgapFollowUp,
f05MhpssClosure,
}) => {
const processedState = Object.fromEntries(
Object.entries({
f01MhpssBaseline,
f02MhpssFollowUp,
f03MhgapBaseline,
f04MhgapFollowUp,
f05MhpssClosure,
}).map(([key, value]) => [key, safeKeyValuePairs(value)])
);
return {
optionSets,
...processedState,
};
}
);
Save-option-set-json-to-github:
name: Save option-set json to github
adaptor: '@openfn/language-http@latest'
credential: [email protected]
body: |
const metadataPath =
'repos/OpenFn/openfn-lime-pilot/contents/metadata/metadata_mapping.json';
get(metadataPath, {
headers: {
'user-agent': 'OpenFn',
},
});
fn(state => {
const {
optionSets,
f01MhpssBaseline,
f02MhpssFollowUp,
f03MhgapBaseline,
f04MhgapFollowUp,
f05MhpssClosure,
data,
} = state;
state.body = {
message: 'Update metadata content',
committer: {
name: 'Emmanuel Evance',
email: '[email protected]',
},
content: util.encode(
JSON.stringify({
optionSets,
f01MhpssBaseline,
f02MhpssFollowUp,
f03MhgapBaseline,
f04MhgapFollowUp,
f05MhpssClosure,
})
),
sha: data.sha,
};
return state;
});
put(metadataPath, {
body: $.body,
headers: {
Accept: 'application/vnd.github+json',
'X-GitHub-Api-Version': '2022-11-28',
'user-agent': 'OpenFn',
},
});
triggers:
webhook:
type: webhook
enabled: true
edges:
webhook->Get-metadata-file-from-Sharepoint:
source_trigger: webhook
target_job: Get-metadata-file-from-Sharepoint
condition_type: always
enabled: true
Get-metadata-file-from-Sharepoint->Map-metadata-file-to-option-set-Json-format:
source_job: Get-metadata-file-from-Sharepoint
target_job: Map-metadata-file-to-option-set-Json-format
condition_type: on_job_success
enabled: true
Map-metadata-file-to-option-set-Json-format->Save-option-set-json-to-github:
source_job: Map-metadata-file-to-option-set-Json-format
target_job: Save-option-set-json-to-github
condition_type: on_job_success
enabled: true
wf1-dhis2-omrs-migration:
name: wf1-dhis2-omrs-migration
jobs:
Fetch-Metadata:
name: Fetch Metadata
adaptor: '@openfn/[email protected]'
credential: null
body: |
fn(state => {
// const manualCursor = '2023-06-20T17:00:00.00';
state.cursor = state.manualCursor || state.lastRunDateTime;
console.log('Date cursor to filter TEI extract ::', state.cursor);
return state;
});
// Get trackedEntityInstances that are "active" in the target program
get(
'tracker/trackedEntities',
{
orgUnit: 'OPjuJMZFLop',
program: 'w9MSPn5oSqp',
programStatus: 'ACTIVE',
},
{},
state => {
const trackedEntityInstances = state.data.instances
.filter(tei => tei.updatedAt >= state.cursor) //for testing
//.filter(tei => tei.createdAt > state.cursor) //for prod
//.slice(0, 1); //to limit 1 for testing
const offset = 2; // GMT+2 (Geneva time)
const currentDateTime = new Date();
currentDateTime.setHours(currentDateTime.getHours() + offset);
const lastRunDateTime = currentDateTime.toISOString().replace('Z', '');
//console.log('TEI payload found before filter ::', JSON.stringify(state.data.instances, null, 2));
console.log('# of TEIs found before filter ::', state.data.instances.length);
//console.log('lastUpdated of TEI eWXRNHtmHB0 :: ', JSON.stringify(state.data.instances.filter(tei => tei.trackedEntity == 'eWXRNHtmHB0'), null, 2));
console.log('# of TEIs to migrate to OMRS ::', trackedEntityInstances.length);
// console.log(
// 'trackedEntityInstance IDs ::',
// trackedEntityInstances.map(tei => tei.trackedEntityInstance)
// );
console.log('Next sync start date:', lastRunDateTime);
return {
...state,
// data: {},
references: [],
trackedEntityInstances,
lastRunDateTime,
};
}
);
Get-Locations:
name: Get Locations
adaptor: '@openfn/language-dhis2@latest'
credential: [email protected]
body: |
get('optionGroups/kdef7pUey9f', {
fields: 'id,displayName,options[id,displayName,code]',
});
fn(({ data, ...state }) => {
state.locations = data;
return state;
});
fn(state => {
state.nationalityMap = {
afghanistan: '84066564-253e-43d8-b141-76730cffa878',
albania: 'db21f4f9-faf2-4358-8297-0ae76627b3b8',
algeria: '5f6c017f-074c-46b3-92d0-d055e2094366',
angola: '8a2e5a03-8a74-41ae-9a98-2310f9ce400d',
anguilla: 'c911af8a-171c-4ee9-b1ff-934373e8a819',
argentina: 'b83d24e8-34d8-4920-83c0-8ba014467ff4',
armenia: '39f1652a-f2b7-4b65-a7e1-7097ac6cdef0',
aruba: 'f3f1cba1-7c1e-4234-86a2-f27bb5964fee',
azerbaijan: '29750013-0e35-47ca-8f77-9192a923fb07',
bangladesh: 'a99de53c-ce76-4b1e-91b2-461094baf79e',
belarus: '664baba4-c552-47b9-97c0-ff67dafd27d6',
benin: 'cf863e31-bb38-48ed-90dd-f3dedcac304c',
bhutan: 'd45a57c9-994f-4deb-8845-9b785860a2ec',
bolivia: 'd8800d10-862b-42f1-8e22-cac1ce1bbcae',
bosnia_and_herzegovina: '05d8f4ef-45eb-463d-b2f3-8a5a613ee6b9',
botswana: '1304a0de-5b70-4d36-a873-e72a82963316',
brazil: '353ff388-64e6-434c-b78f-ca9636390389',
british_virgin_islands: 'b02c6d20-83a2-4947-8a7d-91d1f9c4d8a2',
bulgaria: '91c85a62-2b02-483a-aefd-e29d368565fe',
burkina_faso: '6c90c1ae-17a4-4e94-a267-4fba4c94efd8',
burundi: '8a2ed0db-eaad-44bc-bf06-5cb1b2a3db0b',
cambodia: '4fd14df8-8279-4dfa-bdd3-e1ab26bc0264',
cameroon: '873552ac-9850-4cc1-ae09-17eb0fccf405',
cape_verde: 'cfbc220a-1d6c-4469-bb6d-a8e3deb4f7e7',
central_african_republic: '61a4c4a4-25c2-4459-a874-ec1d24f8323a',
chad: '9e41e71c-f5d5-456c-a6f9-2129b8055bfc',
chile: '05333883-44e9-4f57-836a-041391803007',
china: '15016874-3e20-484a-baa8-9b94e1a3d358',
colombia: 'a008dff8-ce96-4662-bf8a-372e43d424f0',
comoros: '9d8738c8-40c2-4c66-aabb-ef176a20ffe8',
costa_rica: 'fb52f8c9-40ec-4dc4-92a4-d465612de2ff',
cote_divoire: '513cb36a-3f67-46ea-a789-fcdaca0e26f5',
cuba: '147c2434-5d7e-420c-8053-ba623301f3f5',
djibouti: 'cf5b334f-1c0f-41fc-ab54-53ff1e942830',
dominica: 'f70e51e5-b76c-4c38-9bf2-ef8e1f308ce1',
dominican_republic: 'ce72fc9b-619b-4c32-b865-600e888ad814',
drc_congo: '8f6d3d2a-e09f-473b-99c9-e539f97ceab6',
east_timor: '854f2f66-40e1-4a6a-9dee-09c832a52289',
ecuador: 'f9810f9a-78a7-42a2-99e6-19c629642386',
egypt: 'cc7343f8-9243-4d09-b378-58363850d624',
el_salvador: '9a34935e-5a8a-45be-8ccd-cb23192e420f',
equatorial_guinea: '7e591605-d723-4398-982a-8737af63a2dc',
eritrea: 'c61f03c2-0d1f-444f-a974-0a61063aff71',
ethiopia: '7478d375-014e-410e-a355-090143e88f5b',
gabon: '9f46ae06-114a-47fa-8f8d-e9749f04da25',
gambia: '5ec7ddd7-14a5-48ec-9e7c-8896d1010655',
georgia: 'bc71788f-db69-4b6f-8d1c-57a74395bdd2',
ghana: '2eb4ff46-d908-4148-9b0d-40ccfc1a655a',
greece: 'b75d6bcc-fadf-4141-8d0f-2463154b89f7',
guam: '51fa502b-98a3-4c42-b5fd-7b4d64489bb9',
guatemala: '3725a4d2-b28f-466b-905a-bafeaeb75855',
guinea: 'eeaff39c-8afd-43f7-b9a0-53729f5df1d8',
guinea_bissau: '14e90203-9197-42ea-9222-acafd2fd6984',
guyana: 'ba4dfa7e-f3cd-4e94-8ca7-6b96a93378a8',
haiti: 'f76f7dcb-f82e-4257-a627-1685ff3f3586',
honduras: 'cdd1336e-495b-4868-aace-57a84442d6fd',
india: '378d0107-eb43-485d-930c-0704b4e5aa11',
indonesia: '1cbe17e6-adc2-4680-bee0-54d94af75ebf',
iran: 'b422270e-d8af-4a32-b523-742545a17a3f',
iraq: '03aa7d6e-7656-48e4-8dc0-5e27706722c0',
jordan: '842f963c-f84d-4076-a8db-337295fd9b91',
kazakhstan: '6f6d0e78-2c81-411d-8d13-367e250dc110',
kenya: 'ad351a33-8846-4cad-8195-b07b6041d4a5',
kuwait: '4aee7a88-cda9-454e-9f25-4a6420270417',
kyrgyzstan: 'ace3b851-042b-46a6-8fea-68aae042d614',
laos: 'dfb01b39-c224-459e-b045-dd9461b9a1e5',
lebanon: '7de78f22-f53e-48d2-923f-ae1e4d814f46',
lesotho: 'b35b29c5-9bb7-4b40-ad33-29eecd28a9e6',
liberia: 'a5fd61b4-fd27-433d-8428-7e88a7f27921',
libya: '600c6af4-b767-423c-b942-7f06ca467258',
macedonia: '5837cc40-9ab5-4088-91c8-ca6e4b57e903',
madagascar: '3782bf3c-380e-4b60-b21a-38199073f112',
malawi: 'e8b5f188-6a5c-43ae-b4a5-200abb13153e',
malaysia: '3facca11-fbaa-4c40-8fac-4751d45c3f1b',
mali: '3e844a47-526a-46f9-afea-1af9ff8690aa',
martinique: '051ce04e-05e8-4430-8b75-3e499bbffbc8',
mauritania: '8acb006b-8596-4a98-8177-acb4cb575956',
mauritius: '17ced083-eb2a-4046-a713-26cabc7af95d',
mayotte: '1af148fe-2698-4b89-bf7f-87e5c48b6848',
mexico: '8381208f-01ca-4ed3-8f2c-f73ed1c316e3',
moldova: 'f0e9c8b5-69b5-48df-8cb9-2d089ba04e46',
mongolia: '9f341cb1-dcb5-4f6c-bd21-b57db01b4193',
morocco: 'ef467a17-91e8-4124-a136-7ed8ff7c7d15',
mozambique: '0916133b-4d93-4d60-9c20-e7ee3936f391',
myanmar: 'e81ba700-f9fc-4ed0-b248-578a25717cdb',
namibia: '0cb123dc-8810-4840-b6ab-6a527c5a79ef',
nauru: '3386fe63-2158-4040-a502-9f65fd2079d3',
nepal: 'fb01b01a-6775-423c-8012-7d43f587cb6c',
new_caledonia: 'e67c072b-7707-491f-8c2e-13c914216b61',
nicaragua: 'f6a9521c-596b-49f9-b914-67138e8c17e6',
niger: '7561db90-a866-4443-93f4-95cac1d47e9c',
nigeria: '4134651a-7f53-45fb-8bc6-7fed9cf36f51',
north_korea: '4d3079e4-8568-48e6-9342-665896875a38',
oman: '9b0af037-99d1-43b8-ac06-82137ec4b06d',
other: 'Other',
pakistan: 'f45d93c3-c9b0-4333-a5e6-299b7c425812',
palestine: 'e2a19948-49aa-44c0-98ef-67ae1160ef43',
panama: '1ef5a828-9d0d-4336-91ab-880d5dc0151c',
papua_new_guinea: 'e1e6b451-d7fe-4954-b225-99b2de82a4c0',
paraguay: 'd8412016-82f5-4801-a026-1bdc429850b7',
peru: 'e74fa87f-8469-46b0-975f-6cb37c394564',
philippines: 'bdbd5c9f-1f28-4f4d-a254-4a84f8bb2c8f',
puerto_rico: '39fca1d0-d2e7-4b13-82bd-626fbec71252',
republic_of_congo: '5db9afa5-b57e-4f45-8b1c-af766f14fc58',
reunion: '1dae4b2d-50c9-4bf1-b25a-7063600a5e74',
romania: '457e745e-ae97-463d-95a9-8d5689d3ca2b',
rwanda: '6bc925a1-7699-496a-85b0-c290699381db',
samoa: 'e03b381b-a7f4-40eb-964f-51571dc3c48c',
sao_tome_and_principe: 'f66bbb42-684f-42d7-bfcd-95d586eb7dc9',
saudi_arabia: 'fdf495a4-e60c-46f7-a8a2-61a216849086',
senegal: 'ad948f1b-0733-4f8d-b049-d64289b43a10',
serbia: 'd2e69cef-3bff-4220-ba91-a6a678fb606b',
sierra_leone: 'ffba9caf-b6aa-4078-845e-578f7a7fd566',
somalia: '99c8dccc-4dfa-4d30-86be-42a309ab431f',
south_africa: '75882d62-1c55-480d-b411-8ca40c3307df',
south_korea: '0603d6b9-334f-4443-ab60-7c5d457b95fc',
south_sudan: 'f113e24e-2ea9-49a2-9b28-59241b9adb21',
sri_lanka: 'b0031c01-d242-4410-b98b-cc1511590b85',
sudan: '2f03a932-2b75-4e8b-9f44-0fcd83c75dc4',
suriname: 'c65d3329-98d4-4dd7-89d3-141b70d00eb2',
swaziland: '06a2703b-af17-4e44-83f5-6cc9a8a75320',
switzerland: 'dcdcdc70-a006-4b0a-bac2-7de89b022b65',
syria: '1e34ee55-ef9f-4386-bae6-6995555ded75',
tajikistan: '34836c60-5449-48d6-b3c9-c0b3361b9f2c',
tanzania: '050a8eb1-0d77-4f65-a2da-776a13bcd2a4',
thailand: '289ac5bd-6434-4837-86bf-b54d22970ac8',
togo: '6a583e64-869d-477d-a1c1-746320d45fc4',
tonga: 'd381f06d-2365-4f40-948b-cfe90d8cb532',
tunisia: '56be7864-fde6-4db3-8fa5-b9dd42cd9c53',
turkey: '7429c779-1d3a-4aec-8256-d0b1637e1bd1',
turkmenistan: '3ef17df5-299b-4385-9ea6-572df4b6f9ca',
uganda: 'be3d11d3-446d-440c-a582-d01c7cbb0eda',
ukraine: '38c99c8d-2b93-4848-a537-b1865a260bb2',
unknown: 'Unknown',
uruguay: 'c2e45baf-748b-4d7b-a391-ed6b802b6f94',
uzbekistan: '60512350-d79b-41aa-aff0-1b28ca4aa5f1',
venezuela: '557cea4a-0049-4b7a-b373-ed63f294a2a0',
vietnam: '49509c5f-e533-48a8-bf06-86935e3376b2',
western_sahara: '4086dfd2-f4f5-4107-93e8-07bee235af8f',
yemen: '6a3214e0-f94b-414c-8148-968e24386671',
zambia: '3ec0432d-ea37-4159-a658-29d6f07fe21a',
zimbabwe: 'ce1b0d8d-0a2d-4f93-a6ed-64aca2fd0f45',
};
state.statusMap = {
asylum_seeker: 'f921ffdd-72ca-4d58-a89b-1fa2e959d110',
no_status: '2bacead2-f280-457c-9d28-e80e106f7d25',
refugee: 'MSF-AAAAAA000000000000001929',
single: '20b8524e-4c26-4fa0-81f0-fa23ebacc54d',
married: 'MSF-AAAAAA000000000000001863',
widowed: 'MSF-AAAAAA000000000000001864',
divorced_separated: 'MSF-AAAAAA000000000000001865',
concubine: '1060AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
not_applicable: 'MSF-AAAAAA000000000000001823',
student: 'MSF-AAAAAA000000000000001871',
permanent_employee: '4a18a820-f3a1-4bb7-9138-558a9ecc81da',
occasional_employee: '2cb73bee-7f94-4695-89c7-c81187dbc90c',
unemployed: 'MSF-AAAAAA000000000000001870',
housewife: '9b14b4d4-b749-4acf-acfe-79c480f3c4b3',
other: 'MSF-AAAAAA000000000000001329',
unknown: '1067AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
idp: 'MSF-AAAAAA000000000000001930',
internationally_displaced: '515c5abe-4172-4d0c-a991-0de2888228d7',
non_displaced: 'bbdb287c-4ba1-4944-bd87-eb126c5f9d92',
returnee: 'fc49acaa-ece2-4365-9dfb-70c2105de8b1',
};
return state;
});
Create-Patients:
name: Create Patients
adaptor: '@openfn/language-openmrs@latest'
credential: [email protected]
body: |
//Define gender options and prepare newPatientUuid and identifiers
fn(state => {
const genderOptions = {
male: 'M',
female: 'F',
unknown: 'U',
transgender_female: 'O',
transgender_male: 'O',
prefer_not_to_answer: 'O',
gender_variant_non_conforming: 'O',
};
const identifiers = [];
const newPatientUuid = [];
const { trackedEntityInstances } = state;
if (trackedEntityInstances.length > 0)
console.log(
'# of TEIs to send to OpenMRS: ',
trackedEntityInstances.length
);
if (trackedEntityInstances.length === 0)
console.log('No data fetched in step prior to sync.');
return {
...state,
genderOptions,
newPatientUuid,
identifiers,
};
});
//First we generate a unique OpenMRS ID for each patient
each(
'trackedEntityInstances[*]',
post(
'idgen/identifiersource/8549f706-7e85-4c1d-9424-217d50a2988b/identifier',
{}
).then(state => {
state.identifiers.push(state.data.identifier);
return state;
})
);
// Then we map trackedEntityInstances to openMRS data model
fn(state => {
const {
trackedEntityInstances,
identifiers,
genderOptions,
nationalityMap,
statusMap,
locations,
} = state;
const getValueForCode = (attributes, code) => {
const result = attributes.find(attribute => attribute.code === code);
return result ? result.value : undefined;
};
const calculateDOB = age => {
const currentDate = new Date();
const currentYear = currentDate.getFullYear();
const birthYear = currentYear - age;
const birthday = new Date(
birthYear,
currentDate.getMonth(),
currentDate.getDay()
);
return birthday.toISOString().replace(/\.\d+Z$/, '+0000');
};
state.patients = trackedEntityInstances.map((d, i) => {
const patientNumber = getValueForCode(d.attributes, 'patient_number'); // Add random number for testing + Math.random()
const nationality =
nationalityMap[getValueForCode(d.attributes, 'origin_nationality')];
const currentStatus =
statusMap[getValueForCode(d.attributes, 'current_status')];
const legalStatus =
getValueForCode(d.attributes, 'legal_status') &&
statusMap[getValueForCode(d.attributes, 'legal_status')];
const maritalStatus =
statusMap[getValueForCode(d.attributes, 'marital_status')];
const employmentStatus =
statusMap[getValueForCode(d.attributes, 'occupation')];
const noOfChildren = d.attributes.find(
a => a.attribute === 'SVoT2cVLd5O'
)?.value;
const lonlat = d.attributes.find(a => a.attribute === 'rBtrjV1Mqkz')?.value;
const location = lonlat
? locations.options.find(o => o.code === lonlat)?.displayName
: undefined;
let countyDistrict, cityVillage;
if (location) {
const match = location.match(/^(.*?)\s*\((.*?)\)/);
if (match) {
[, countyDistrict, cityVillage] = match;
cityVillage = cityVillage.split('-')[0].trim(); // Remove country code and trim
}
}
return {
patientNumber,
person: {
age: getValueForCode(d.attributes, 'age'),
gender: genderOptions[getValueForCode(d.attributes, 'sex')],
birthdate:
d.attributes.find(a => a.attribute === 'WDp4nVor9Z7')?.value ??
calculateDOB(getValueForCode(d.attributes, 'age')),
birthdateEstimated: d.attributes.find(
a => a.attribute === 'WDp4nVor9Z7'
)
? true
: false,
names: [
{
familyName:
d.attributes.find(a => a.attribute === 'fa7uwpCKIwa')?.value ??
'unknown',
givenName:
d.attributes.find(a => a.attribute === 'Jt9BhFZkvP2')?.value ??
'unknown',
},
],
addresses: [
{
country: 'Iraq',
stateProvince: 'Ninewa',
countyDistrict,
cityVillage,
},
],
attributes: [
{
attributeType: '24d1fa23-9778-4a8e-9f7b-93f694fc25e2',
value: nationality,
},
{
attributeType: 'e0b6ed99-72c4-4847-a442-e9929eac4a0f',
value: currentStatus,
},
legalStatus && {
attributeType: 'a9b2c642-097f-43f8-b96b-4d2f50ffd9b1',
value: legalStatus,
},
{
attributeType: '3884dc76-c271-4bcb-8df8-81c6fb897f53',
value: maritalStatus,
},
employmentStatus && {
attributeType: 'dd1f7f0f-ccea-4228-9aa8-a8c3b0ea4c3e',
value: employmentStatus,
},
noOfChildren && {
attributeType: 'e363161a-9d5c-4331-8463-238938f018ed',
value: noOfChildren,
},
].filter(i => i),
},
identifiers: [
{
identifier: identifiers[i], //map ID value from DHIS2 attribute
identifierType: '05a29f94-c0ed-11e2-94be-8c13b969e334',
location: 'cf6fa7d4-1f19-4c85-ac50-ff824805c51c', //default location old:44c3efb0-2583-4c80-a79e-1f756a03c0a1
preferred: true,
},
{
uuid: d.trackedEntity,
identifier: patientNumber,
identifierType: '8d79403a-c2cc-11de-8d13-0010c6dffd0f', //Old Identification number
location: 'cf6fa7d4-1f19-4c85-ac50-ff824805c51c', //default location
preferred: false, //default value for this identifiertype
},
],
};
});
return state;
});
// Creating patients in openMRS
each(
'$.patients[*]',
upsert(
'patient',
state => {
return { q: state.data.patientNumber };
},
state => {
const { patientNumber, ...patient } = state.data;
console.log(
'Upserting patient record\n',
JSON.stringify(patient, null, 2)
);
return patient;
},
state => {
state.newPatientUuid.push({
patient_number: state.references.at(-1)?.patientNumber,
uuid: state.data.uuid,
});
return state;
}
)
);
// Clean up state
fn(({ data, references, ...state }) => state);
Update-Teis:
name: Update Teis
adaptor: '@openfn/[email protected]'
credential: [email protected]
body: |
fn(state => {
if (state.newPatientUuid.length === 0) {
console.log('No data fetched in step prior to sync.');
}
console.log(
'newPatientUuid ::',
JSON.stringify(state.newPatientUuid, null, 2)
);
return state;
});
// Update TEI on DHIS2
each(
'newPatientUuid[*]',
upsert(
'trackedEntityInstances',
state => ({
ou: 'OPjuJMZFLop',
program: 'w9MSPn5oSqp',
filter: [`P4wdYGkldeG:Eq:${state.data.patient_number}`],
}),
{
orgUnit: 'OPjuJMZFLop',
program: 'w9MSPn5oSqp',
trackedEntityType: 'cHlzCA2MuEF',
attributes: [
{ attribute: 'P4wdYGkldeG', value: `${$.data.patient_number}` }, //DHIS2 patient number to use as lookup key
{ attribute: 'AYbfTPYMNJH', value: `${$.data.patient.uuid}` }, //OMRS patient uuid
{
attribute: 'ZBoxuExmxcZ',
value: `${$.data.patient.identifier[0].identifier}`,
}, //id generated in wf1-2 e.g., "IQ146-24-000-027"
],
}
)
);
Get-Teis-and-Locations:
name: Get Teis and Locations
adaptor: '@openfn/language-dhis2@latest'
credential: [email protected]
body: |
// Check out the Job Writing Guide for help getting started:
// https://docs.openfn.org/documentation/jobs/job-writing-guide
triggers:
cron:
type: cron
cron_expression: '0 0 * * *'
enabled: false
edges:
cron->Fetch-Metadata:
source_trigger: cron
target_job: Fetch-Metadata
condition_type: always
enabled: true
Get-Locations->Create-Patients:
source_job: Get-Locations
target_job: Create-Patients
condition_type: js_expression
condition_label: has-teis
condition_expression: |
state.teis.length > 0 && !state.errors
enabled: true
Create-Patients->Update-Teis:
source_job: Create-Patients
target_job: Update-Teis
condition_type: on_job_success
enabled: true
Fetch-Metadata->Get-Teis-and-Locations:
source_job: Fetch-Metadata
target_job: Get-Teis-and-Locations
condition_type: on_job_success
enabled: true
Get-Teis-and-Locations->Get-Locations:
source_job: Get-Teis-and-Locations
target_job: Get-Locations
condition_type: on_job_success
enabled: true
wf2-omrs-dhis2:
name: wf2-omrs-dhis2
jobs:
Get-Patients:
name: Get Patients
adaptor: '@openfn/language-openmrs@latest'
credential: [email protected]
body:
path: workflows/wf2/1-get-patients.js
Upsert-TEIs:
name: Upsert TEIs
adaptor: '@openfn/[email protected]'
credential: [email protected]
body:
path: workflows/wf2/2-upsert-teis.js
Get-Encounters:
name: Get Encounters
adaptor: '@openfn/language-http@latest'
credential: '[email protected](HTTP)'
body:
path: workflows/wf2/3-get-encounters.js
Get-TEIs-and-Map-Answers:
name: Get TEIs and Map Answers
adaptor: '@openfn/[email protected]'
credential: [email protected]
body:
path: workflows/wf2/5-get-teis.js
Create-Events:
name: Create Events
adaptor: '@openfn/[email protected]'
credential: [email protected]
body:
path: workflows/wf2/6-create-events.js
Mappings:
name: Mappings
adaptor: '@openfn/[email protected]'
credential: null
body: |
fn(state => {
state.placeOflivingMap = {
'Al Ayadya': 'lon42.423409_lat36.481517',
'Al Bosaif': 'lon43.159987_lat36.27218',
'Al Jazaer': 'lon43.164382_lat36.354178',
'Al Karama': 'lon43.203229_lat36.341201',
'Al Mothana': 'lon43.171821_lat36.37478',
'Al Nabi Younis': 'lon43.165939_lat36.348147',
'Al Qawsyat': 'lon43.103793_lat36.440127',
'Al Rashedia': 'lon43.092499_lat36.405267',
'Al Sahaji': 'lon42.94467_lat36.280869',
'Al Salamya': 'lon43.314713_lat36.142365',
'Al Shora': 'lon43.223899_lat35.994031',
'Al Sokar': 'lon43.169151_lat36.389263',
'Al Zahra': 'lon43.209061_lat36.384103',
'Al-Abar': 'lon43.097359_lat36.337313',
'Al-Adba': 'lon43.107228_lat36.228804',
Alamel: 'lon43.095958_lat36.324676',
'Al-Araby': 'lon43.116613_lat36.405873',
Alathba: 'lon43.107062_lat36.228771',
'Al-Auraiby': 'lon43.092403_lat36.35815',
'Al-Baaj': 'lon41.715935_lat36.04154',
'Al-Bakeer': 'lon43.2005_lat36.372429',
'Al-Dandan': 'lon43.146081_lat36.33257',
'Al-Ekhaa': 'lon43.216323_lat36.353175',
'Al-Ektasadeen': 'lon43.086044_lat36.361673',
'Al-Entesar': 'lon43.213825_lat36.326253',
Aleslaah: 'lon43.082506_lat36.350517',
'Al-Faroak': 'lon43.128901_lat36.337586',
Alflah: 'lon43.183338_lat36.394155',
Algosq: 'lon43.150265_lat36.327732',
Algzlany: 'lon43.137129_lat36.320443',
'Al-Hadbaa': 'lon43.15051_lat36.394474',
Alhrmat: 'lon43.072674_lat36.362245',
'Al-Humaidat': 'lon42.978138_lat36.403105',
Aljazeera: 'lon42.268108_lat35.764664',
'Al-Kadasia': 'lon43.200525_lat36.380719',
'Al-Kuba': 'lon43.072704_lat36.410733',
'Al-Ma`Mun': 'lon43.10664_lat36.310099',
'Al-Maghrab': 'lon43.079798_lat36.334318',
Almalayeen: 'lon43.103821_lat36.424167',
'Al-Masarf': 'lon43.179613_lat36.38814',
'Al-Matahen': 'lon43.09246_lat36.338635',
Almnsoor: 'lon43.11188_lat36.318691',
Almoaly: 'lon42.838777_lat36.324391',
Almohalabya: 'lon42.703975_lat36.265162',
Almshahda: 'lon43.120709_lat36.343216',
'Al-Mualamin': 'lon42.923458_lat36.31039',
Almuhandseen: 'lon43.137239_lat36.367498',
Alngar: 'lon43.100449_lat36.357173',
Alnuor: 'lon43.187796_lat36.365769',
Alobor: 'lon43.059863_lat36.313292',
Alquds: 'lon43.22851_lat36.344222',
'Al-Qyaraa': 'lon43.29582_lat35.798215',
Alresala: 'lon43.090091_lat36.322804',
'Al-Rifa`I': 'lon43.102846_lat36.360217',
'Al-Saaha': 'lon43.097854_lat36.34371',
'Al-Sahaji': 'lon42.94396_lat36.280114',
'Al-Samah': 'lon43.212253_lat36.35825',
'Al-Sekak': 'lon43.100669_lat36.339441',
'Al-Shefaa': 'lon43.121928_lat36.352',
Alshohadaa: 'lon43.101322_lat36.318532',
Alshykhan: 'lon43.350052_lat36.691541',
'Alsinaa Alkadema': 'lon43.071956_lat36.347428',
Alsmood: 'lon43.111796_lat36.320265',
'Al-Tahrer': 'lon43.201287_lat36.390342',
'Al-Taiaran': 'lon43.140315_lat36.325341',
Altank: 'lon43.069844_lat36.334344',
Althoraa: 'lon43.110259_lat36.343145',
'Al-Wahdaa': 'lon43.184839_lat36.331538',
'Al-Warshan': 'lon43.097102_lat36.350075',
Alyrmoq: 'lon43.082273_lat36.336458',
Alzngly: 'lon43.109626_lat36.353944',
'Aski Mousl': 'lon42.73514_lat36.513471',
Auenat: 'lon42.399071_lat36.67976',
'Bab Al-Bead': 'lon43.127605_lat36.334953',
Badush: 'lon42.967959_lat36.41445',
Bartella: 'lon43.380304_lat36.349597',
Basheeka: 'lon43.342171_lat36.451798',
Dohok: 'lon42.9842_lat36.859369',
Gogjali: 'lon43.246833_lat36.353981',
'Hamaam Alaleel': 'lon43.260379_lat36.160157',
'Hawi Al-Kanisa': 'lon43.085152_lat36.381247',
'Mosul Algdida': 'lon43.104377_lat36.331809',
'Mosul Al-Kadema': 'lon43.126541_lat36.342823',
Msherfa: 'lon43.179668_lat36.387648',
Nablus: 'lon43.084701_lat36.328359',
Rabeaa: 'lon42.08276_lat36.808678',
'Ragm Hadid': 'lon43.076396_lat36.326236',
Sadam: 'lon43.208775_lat36.383105',
Sanjar: 'lon41.864538_lat36.316244',
Somer: 'lon43.200918_lat36.301028',
Sumeel: 'lon42.847606_lat36.857084',
'Tal Abta': 'lon42.563028_lat35.94226',
'Tal Afer': 'lon42.450003_lat36.374589',
'Tal Alroman': 'lon43.089466_lat36.316493',
'Tal Keef': 'lon43.120284_lat36.489935',
'Tal Zalt': 'lon42.829782_lat36.282837',
Tmooz: 'lon43.084933_lat36.365008',
'Twim & Mjarin': 'lon42.692998_lat36.363335',
'Wady Alaen': 'lon43.103452_lat36.325881',
'Wady Hagr': 'lon43.126976_lat36.320946',
Zakho: 'lon42.688446_lat37.146393',
Zumar: 'lon42.603252_lat36.655901',
Other: 'lon0.0_lat0.0',
};
return state;
});
fn(state => {
state.nationalityMap = {
'84066564-253e-43d8-b141-76730cffa878': 'afghanistan',
'db21f4f9-faf2-4358-8297-0ae76627b3b8': 'albania',
'5f6c017f-074c-46b3-92d0-d055e2094366': 'algeria',
'8a2e5a03-8a74-41ae-9a98-2310f9ce400d': 'angola',
'c911af8a-171c-4ee9-b1ff-934373e8a819': 'anguilla',
'b83d24e8-34d8-4920-83c0-8ba014467ff4': 'argentina',
'39f1652a-f2b7-4b65-a7e1-7097ac6cdef0': 'armenia',
'f3f1cba1-7c1e-4234-86a2-f27bb5964fee': 'aruba',
'29750013-0e35-47ca-8f77-9192a923fb07': 'azerbaijan',
'a99de53c-ce76-4b1e-91b2-461094baf79e': 'bangladesh',
'664baba4-c552-47b9-97c0-ff67dafd27d6': 'belarus',
'cf863e31-bb38-48ed-90dd-f3dedcac304c': 'benin',
'd45a57c9-994f-4deb-8845-9b785860a2ec': 'bhutan',
'd8800d10-862b-42f1-8e22-cac1ce1bbcae': 'bolivia',
'05d8f4ef-45eb-463d-b2f3-8a5a613ee6b9': 'bosnia_and_herzegovina',
'1304a0de-5b70-4d36-a873-e72a82963316': 'botswana',
'353ff388-64e6-434c-b78f-ca9636390389': 'brazil',
'b02c6d20-83a2-4947-8a7d-91d1f9c4d8a2': 'british_virgin_islands',
'91c85a62-2b02-483a-aefd-e29d368565fe': 'bulgaria',
'6c90c1ae-17a4-4e94-a267-4fba4c94efd8': 'burkina_faso',
'8a2ed0db-eaad-44bc-bf06-5cb1b2a3db0b': 'burundi',
'4fd14df8-8279-4dfa-bdd3-e1ab26bc0264': 'cambodia',
'873552ac-9850-4cc1-ae09-17eb0fccf405': 'cameroon',
'cfbc220a-1d6c-4469-bb6d-a8e3deb4f7e7': 'cape_verde',
'61a4c4a4-25c2-4459-a874-ec1d24f8323a': 'central_african_republic',
'9e41e71c-f5d5-456c-a6f9-2129b8055bfc': 'chad',
'05333883-44e9-4f57-836a-041391803007': 'chile',
'15016874-3e20-484a-baa8-9b94e1a3d358': 'china',
'a008dff8-ce96-4662-bf8a-372e43d424f0': 'colombia',
'9d8738c8-40c2-4c66-aabb-ef176a20ffe8': 'comoros',
'fb52f8c9-40ec-4dc4-92a4-d465612de2ff': 'costa_rica',
'513cb36a-3f67-46ea-a789-fcdaca0e26f5': 'cote_divoire',
'147c2434-5d7e-420c-8053-ba623301f3f5': 'cuba',
'cf5b334f-1c0f-41fc-ab54-53ff1e942830': 'djibouti',
'f70e51e5-b76c-4c38-9bf2-ef8e1f308ce1': 'dominica',
'ce72fc9b-619b-4c32-b865-600e888ad814': 'dominican_republic',
'8f6d3d2a-e09f-473b-99c9-e539f97ceab6': 'drc_congo',
'854f2f66-40e1-4a6a-9dee-09c832a52289': 'east_timor',
'f9810f9a-78a7-42a2-99e6-19c629642386': 'ecuador',
'cc7343f8-9243-4d09-b378-58363850d624': 'egypt',
'9a34935e-5a8a-45be-8ccd-cb23192e420f': 'el_salvador',
'7e591605-d723-4398-982a-8737af63a2dc': 'equatorial_guinea',
'c61f03c2-0d1f-444f-a974-0a61063aff71': 'eritrea',
'7478d375-014e-410e-a355-090143e88f5b': 'ethiopia',
'9f46ae06-114a-47fa-8f8d-e9749f04da25': 'gabon',
'5ec7ddd7-14a5-48ec-9e7c-8896d1010655': 'gambia',
'bc71788f-db69-4b6f-8d1c-57a74395bdd2': 'georgia',
'2eb4ff46-d908-4148-9b0d-40ccfc1a655a': 'ghana',
'b75d6bcc-fadf-4141-8d0f-2463154b89f7': 'greece',
'51fa502b-98a3-4c42-b5fd-7b4d64489bb9': 'guam',