dymos_docs_workflow.yml

# Build docs

name: Dymos Docs

on:
  # Trigger on push, pull request
  push:
    branches: [ master ]
  pull_request:
    branches: [ master, develop ]

  # Trigger via workflow_dispatch event
  workflow_dispatch:

jobs:

  test_ubuntu:
    runs-on: ubuntu-latest

    timeout-minutes: 90

    strategy:
      fail-fast: false
      matrix:
        include:
          # baseline versions except with pyoptsparse but no SNOPT
          # build docs to verify those that use pyoptsparse do not use SNOPT
          - NAME: baseline_no_snopt
            PY: '3.10'
            NUMPY: 1.22
            SCIPY: 1.7
            PETSc: 3.17
            PYOPTSPARSE: 'v2.9.3'
            OPENMDAO: 'latest'
            OPTIONAL: '[docs]'
            JAX: '0.3.24'
            PUBLISH_DOCS: 1

          # make sure the latest versions of things don't break the docs
          - NAME: latest
            PY: 3
            NUMPY: 1
            SCIPY: 1
            PETSc: 3
            PYOPTSPARSE: 'latest'
            SNOPT: 7.7
            OPENMDAO: 'dev'
            OPTIONAL: '[docs]'
            JAX: '0.3.24'
            PUBLISH_DOCS: 0

    steps:
      - name: Display run details
        run: |
          echo "============================================================="
          echo "Run #${GITHUB_RUN_NUMBER}"
          echo "Run ID: ${GITHUB_RUN_ID}"
          echo "Testing: ${GITHUB_REPOSITORY}"
          echo "Triggered by: ${GITHUB_EVENT_NAME}"
          echo "Initiated by: ${GITHUB_ACTOR}"
          echo "============================================================="

      - name: Create SSH key
        shell: bash
        env:
          SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
          SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}
        run: |
          mkdir -p ~/.ssh/
          echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa
          sudo chmod 600 ~/.ssh/id_rsa
          echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts

      - name: Checkout code
        uses: actions/checkout@v3

      - name: Fetch tags
        run: |
          git fetch --prune --unshallow --tags

      - name: Setup conda
        uses: conda-incubator/setup-miniconda@v2
        with:
          python-version: ${{ matrix.PY }}
          conda-version: "*"
          channels: conda-forge,defaults
          channel-priority: true

      - name: Install Numpy/Scipy
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install Numpy/Scipy"
          echo "============================================================="
          conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} -q -y

      - name: Install jax
        if: matrix.JAX
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install jax"
          echo "============================================================="
          python -m pip install jaxlib==${{ matrix.JAX }} jax==${{ matrix.JAX }}

      - name: Install PETSc
        if: matrix.PETSc
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install PETSc"
          echo "============================================================="
          if [[ "${{ matrix.OPENMPI }}" && "${{ matrix.MPI4PY }}" ]]; then
            conda install openmpi=${{ matrix.OPENMPI }} mpi4py=${{ matrix.MPI4PY }} petsc4py=${{ matrix.PETSc }} -q -y
          elif [[ "${{ matrix.MPI4PY }}" ]]; then
            conda install mpi4py=${{ matrix.MPI4PY }} petsc4py=${{ matrix.PETSc }} -q -y
          else
            conda install mpi4py petsc4py=${{ matrix.PETSc }} -q -y
          fi
          echo "-----------------------"
          echo "Quick test of mpi4py:"
          mpirun -n 2 python -c "from mpi4py import MPI; print(f'Rank: {MPI.COMM_WORLD.rank}')"
          echo "-----------------------"
          echo "Quick test of petsc4py:"
          mpirun -n 2 python -c "import numpy; from mpi4py import MPI; comm = MPI.COMM_WORLD; import petsc4py; petsc4py.init(); x = petsc4py.PETSc.Vec().createWithArray(numpy.ones(5)*comm.rank, comm=comm);  print(x.getArray())"
          echo "-----------------------"
          echo "OMPI_MCA_rmaps_base_oversubscribe=1" >> $GITHUB_ENV

      - name: Install pyOptSparse
        if: matrix.PYOPTSPARSE
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install pyoptsparse"
          echo "============================================================="

          if [[ "${{ matrix.PYOPTSPARSE }}" == "conda-forge" ]]; then
            if [[ "${{ matrix.SNOPT }}" ]]; then
              echo "SNOPT ${{ matrix.SNOPT }} was requested but is not available on conda-forge"
            fi

            conda install -c conda-forge pyoptsparse
          else
            pip install git+https://github.com/OpenMDAO/build_pyoptsparse

            if [[ "${{ matrix.PYOPTSPARSE }}" == "latest" ]]; then
              LATEST_URL=`curl -fsSLI -o /dev/null -w %{url_effective} https://github.com/mdolab/pyoptsparse/releases/latest`
              LATEST_VER=`echo $LATEST_URL | awk '{split($0,a,"/tag/"); print a[2]}'`
              BRANCH="-b $LATEST_VER"
            else
              BRANCH="-b ${{ matrix.PYOPTSPARSE }}"
            fi

            if [[ "${{ matrix.PAROPT }}" ]]; then
              PAROPT="-a"
            fi

            if [[ "${{ matrix.SNOPT }}" == "7.7" && "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then
              echo "  > Secure copying SNOPT 7.7 over SSH"
              mkdir SNOPT
              scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT
              SNOPT="-s SNOPT/src"
            elif [[ "${{ matrix.SNOPT }}" == "7.2" && "${{ secrets.SNOPT_LOCATION_72 }}" ]]; then
              echo "  > Secure copying SNOPT 7.2 over SSH"
              mkdir SNOPT
              scp -qr ${{ secrets.SNOPT_LOCATION_72 }} SNOPT
              SNOPT="-s SNOPT/source"
            elif [[ "${{ matrix.SNOPT }}" ]]; then
              echo "SNOPT version ${{ matrix.SNOPT }} was requested but source is not available"
            fi

            build_pyoptsparse $BRANCH $PAROPT $SNOPT
          fi

      - name: Install OpenMDAO
        if: matrix.OPENMDAO
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install OpenMDAO"
          echo "============================================================="
          if [[ "${{ matrix.OPENMDAO }}" == "dev" ]]; then
            pip install git+https://github.com/OpenMDAO/OpenMDAO
          elif [[ "${{ matrix.OPENMDAO }}" == "latest" ]]; then
            pip install openmdao
          else
            pip install openmdao==${{ matrix.OPENMDAO }}
          fi

      - name: Install bokeh
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install additional packages for testing/coverage"
          echo "============================================================="
          conda install bokeh

      - name: Install Dymos
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Install Dymos"
          echo "============================================================="
          pip install .${{ matrix.OPTIONAL }}

      - name: Display environment info
        shell: bash -l {0}
        run: |
          conda info
          conda list

          echo "============================================================="
          echo "Check installed versions of Python, Numpy and Scipy"
          echo "============================================================="
          python -c "import sys; assert str(sys.version).startswith(str(${{ matrix.PY }})), \
                    f'Python version {sys.version} is not the requested version (${{ matrix.PY }})'"

          python -c "import numpy; assert str(numpy.__version__).startswith(str(${{ matrix.NUMPY }})), \
                    f'Numpy version {numpy.__version__} is not the requested version (${{ matrix.NUMPY }})'"

          python -c "import scipy; assert str(scipy.__version__).startswith(str(${{ matrix.SCIPY }})), \
                    f'Scipy version {scipy.__version__} is not the requested version (${{ matrix.SCIPY }})'"

      - name: Build docs
        id: build_docs
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Building Docs"
          echo "============================================================="
          pip install git+https://github.com/executablebooks/jupyter-book
          cd docs
          jupyter-book build -W --keep-going dymos_book
          python copy_build_artifacts.py

      - name: Display doc build reports
        continue-on-error: True
        if: failure() && steps.build_docs.outcome == 'failure'
        run: |
          echo $PWD
          cd docs
          find dymos_book/_build/html/reports/ -type f -name '*.log' \
          -exec echo "#################################################################" \; \
          -exec echo {} \; \
          -exec echo "#################################################################" \; \
          -exec cat {} \;

      - name: Publish docs
        if: |
          github.event_name == 'push' && github.ref == 'refs/heads/master' &&
          matrix.PUBLISH_DOCS == '1'
        shell: bash -l {0}
        run: |
          echo "============================================================="
          echo "Publishing Docs"
          echo "============================================================="
          pip install ghp-import
          cd $HOME/work/dymos/dymos
          pwd
          ghp-import -n -p -f docs/dymos_book/_build/html