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When running the Tutorial on a fresh R, I stumbled across some difficulties in the
Metabo workflow.
The general R requirement (install.packages('Rserve')) for using a local R Server was missing. KNIME tells you this but maybe we could mention that beforehand.
The same holds for install.packages('Cairo') for bitmap handling (at least on MacOS).
The text was updated successfully, but these errors were encountered:
Also I could not install devtools and ggbiplot from within the R Snippets (needed for the PCAbiplot, rest worked fine). We should either remove that node or really make a section about R dependencies (which explains, which packages to install beforehand).
You could create an R package .. dependencies will be automatically installed via the definitions in the package DESCRIPTION file.
If one needs devtools anyway, install_github() comes with it, so installation boils down to a single command.
If that's too much then:
if (!require("packageXY")) install.packages("packageXY"); require("packageXY");
should work at the beginning for each script.
(not sure if that helps in any way--- not really familiar with the R part of the tutorials).
When running the Tutorial on a fresh R, I stumbled across some difficulties in the
Metabo workflow.
The general R requirement (install.packages('Rserve')) for using a local R Server was missing. KNIME tells you this but maybe we could mention that beforehand.
The same holds for install.packages('Cairo') for bitmap handling (at least on MacOS).
The text was updated successfully, but these errors were encountered: