azure-pipeline-master.yml

# Disable Azure checks in favor of GitHub Actions due to memory issues
pr: none
trigger: none
# trigger:
#   - master

jobs:
  - job: "build_and_push_linux"
    pool:
      vmImage: "ubuntu-latest"
    strategy:
      maxParallel: 8
    timeoutInMinutes: 360

    steps:
      - script: |
          git checkout master

      - bash: echo "##vso[task.prependpath]/opt/mambaforge/bin"
        displayName: Add conda to PATH

      - bash: |
          wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
        displayName: Fetch bioconda install script

      - script: bash install-and-set-up-conda.sh
        displayName: Install bioconda-utils

      # We reconfigure conda to use the right channel setup.
      - script: bash configure-conda.sh
        displayName: Configure conda

      - bash: |
          set -e
          eval "$(conda shell.bash hook)"
          conda activate bioconda

          export OSTYPE="linux-gnu"
          export CI="true"

          bioconda-utils handle-merged-pr recipes config.yml \
            --repo bioconda/bioconda-recipes \
            --git-range $(Build.SourceVersion)~1 $(Build.SourceVersion) \
            --quay-upload-target biocontainers

        env:
          QUAY_LOGIN: $(QUAY_LOGIN)
          QUAY_OAUTH_TOKEN: $(QUAY_OAUTH_TOKEN)
          ANACONDA_TOKEN: $(ANACONDA_TOKEN)
          INVOLUCRO_AUTH: $(INVOLUCRO_AUTH)
          GITHUB_TOKEN: $(GITHUB_TOKEN)
        displayName: Handle merged PR

  - job: "build_and_push_osx"
    pool:
      vmImage: "macOS-latest"
    strategy:
      maxParallel: 4
    timeoutInMinutes: 360

    steps:
      - script: |
          git checkout master

      - bash: echo "##vso[task.prependpath]/opt/mambaforge/bin"
        displayName: Add conda to PATH

      - bash: |
          wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
        displayName: Fetch bioconda install script


      - script: bash install-and-set-up-conda.sh
        displayName: Install bioconda-utils

      # We reconfigure conda to use the right channel setup.
      - script: bash configure-conda.sh
        displayName: Configure conda

      - bash: |
          set -e
          eval "$(conda shell.bash hook)"
          conda activate bioconda
          export OSTYPE="darwin"
          export CI="true"

          # Get MACOSX vars
          source common.sh

          bioconda-utils handle-merged-pr recipes config.yml \
            --repo bioconda/bioconda-recipes \
            --git-range $(Build.SourceVersion)~1 $(Build.SourceVersion) \
            --fallback build
        env:
          QUAY_LOGIN: $(QUAY_LOGIN)
          ANACONDA_TOKEN: $(ANACONDA_TOKEN)
          INVOLUCRO_AUTH: $(INVOLUCRO_AUTH)
          GITHUB_TOKEN: $(GITHUB_TOKEN)
        displayName: Handle merged PR