{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":656364136,"defaultBranch":"main","name":"chrom-seek","ownerLogin":"OpenOmics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-20T19:56:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/97639341?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723760086.0","currentOid":""},"activityList":{"items":[{"before":"4e0bdc94e6891697500960d643b67bd5d1811dbe","after":"73f27db900c65bca496a9ffa7734ea1674261501","ref":"refs/heads/expand_dba_rules","pushedAt":"2024-08-16T16:31:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: inherit from docker v0.5.0","shortMessageHtmlLink":"fix: inherit from docker v0.5.0"}},{"before":null,"after":"4e0bdc94e6891697500960d643b67bd5d1811dbe","ref":"refs/heads/expand_dba_rules","pushedAt":"2024-08-15T22:14:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"feat: add cftoolkit v0.6.0 w rmarkdown","shortMessageHtmlLink":"feat: add cftoolkit v0.6.0 w rmarkdown"}},{"before":"7bdc1081f685280216941181c52c6210a9f5b01a","after":"915b7cd402f0f0e445f34e73cfa180ef54fe7372","ref":"refs/heads/gh-pages","pushedAt":"2024-08-07T17:49:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 9af8d44 with MkDocs version: 1.4.3","shortMessageHtmlLink":"Deployed 9af8d44 with MkDocs version: 1.4.3"}},{"before":"2a50173ce6b6925680590ac40897ab2a668927f4","after":"7bdc1081f685280216941181c52c6210a9f5b01a","ref":"refs/heads/gh-pages","pushedAt":"2024-08-07T17:49:15.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 27a0e29 with MkDocs version: 1.4.3","shortMessageHtmlLink":"Deployed 27a0e29 with MkDocs version: 1.4.3"}},{"before":"98694cba34f21615e81a783e452cf5fc5870380f","after":null,"ref":"refs/heads/add_timestamp_to_snakemake_log","pushedAt":"2024-08-07T17:49:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"skchronicles","name":"Skyler Kuhn","path":"/skchronicles","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18038345?s=80&v=4"}},{"before":"e405e1ddd981b92259e14e0df1ba2b3ab97f7cc1","after":null,"ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-07T17:48:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"skchronicles","name":"Skyler Kuhn","path":"/skchronicles","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18038345?s=80&v=4"}},{"before":"98008811bec8303270ce706b846defc01dc3a521","after":"27a0e29046463d502b35eca1f849e7a64ba3a1cf","ref":"refs/heads/main","pushedAt":"2024-08-07T17:40:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"skchronicles","name":"Skyler Kuhn","path":"/skchronicles","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18038345?s=80&v=4"},"commit":{"message":"Updating VERSION in preparation of new release","shortMessageHtmlLink":"Updating VERSION in preparation of new release"}},{"before":"e0245e0711c498acefea398c294eb00d30fa455f","after":"98008811bec8303270ce706b846defc01dc3a521","ref":"refs/heads/main","pushedAt":"2024-08-07T16:18:10.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: add time stamp to slurm out and err logs (#42)\n\n* fix: add time stamp to slurm out and err logs\r\n\r\n* Update run.sh\r\n\r\ntypo","shortMessageHtmlLink":"fix: add time stamp to slurm out and err logs (#42)"}},{"before":"9af8d445254969d9e2773271e0416b4e785aba94","after":"e0245e0711c498acefea398c294eb00d30fa455f","ref":"refs/heads/main","pushedAt":"2024-08-07T16:17:50.000Z","pushType":"pr_merge","commitsCount":31,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"Merge pull request #41 from OpenOmics/refactor_codebase\n\nRefactor codebase","shortMessageHtmlLink":"Merge pull request #41 from OpenOmics/refactor_codebase"}},{"before":"73076f82db10a2a131ded571a6ac3e200945cfd0","after":"e405e1ddd981b92259e14e0df1ba2b3ab97f7cc1","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-07T16:00:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"Merge branch 'refactor_codebase' of http://github.com/OpenOmics/chrom-seek into refactor_codebase","shortMessageHtmlLink":"Merge branch 'refactor_codebase' of http://github.com/OpenOmics/chrom…"}},{"before":"fd490e94bac91cab65f7ce1ac0aee6cc27e65116","after":"73076f82db10a2a131ded571a6ac3e200945cfd0","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-07T14:24:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tovahmarkowitz","name":"Tovah Markowitz","path":"/tovahmarkowitz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22156648?s=80&v=4"},"commit":{"message":"Update prep_diffbind.py\n\nAdding ending carriage return to output files","shortMessageHtmlLink":"Update prep_diffbind.py"}},{"before":"1ac0aa2afa03a8a22c7103cab167ce9ea6844e39","after":"98694cba34f21615e81a783e452cf5fc5870380f","ref":"refs/heads/add_timestamp_to_snakemake_log","pushedAt":"2024-08-07T13:45:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"Update run.sh\n\ntypo","shortMessageHtmlLink":"Update run.sh"}},{"before":"a453a6b917b4ddbe132f4cc21ed30425fda8313b","after":"fd490e94bac91cab65f7ce1ac0aee6cc27e65116","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-06T17:53:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: refactor diffbind prep script, add error case exception for umap in diffbindqc rmd","shortMessageHtmlLink":"fix: refactor diffbind prep script, add error case exception for umap…"}},{"before":null,"after":"1ac0aa2afa03a8a22c7103cab167ce9ea6844e39","ref":"refs/heads/add_timestamp_to_snakemake_log","pushedAt":"2024-08-05T14:50:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: add time stamp to slurm out and err logs","shortMessageHtmlLink":"fix: add time stamp to slurm out and err logs"}},{"before":"62aa68d628dda6e91b44753c170d62247aa5eaa0","after":"a453a6b917b4ddbe132f4cc21ed30425fda8313b","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-02T16:59:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: comment out debug-dag from dryrun snakemake execution","shortMessageHtmlLink":"fix: comment out debug-dag from dryrun snakemake execution"}},{"before":"5b9ff2c7e762d9fb4fd8797af350117b470954a4","after":"62aa68d628dda6e91b44753c170d62247aa5eaa0","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-02T16:22:58.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"Merge branch 'refactor_codebase' of http://github.com/OpenOmics/chrom-seek into refactor_codebase","shortMessageHtmlLink":"Merge branch 'refactor_codebase' of http://github.com/OpenOmics/chrom…"}},{"before":"06fcb3c64a33c70a9018d3391a441332cbcdc7f9","after":"5b9ff2c7e762d9fb4fd8797af350117b470954a4","ref":"refs/heads/refactor_codebase","pushedAt":"2024-08-02T14:52:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"skchronicles","name":"Skyler Kuhn","path":"/skchronicles","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18038345?s=80&v=4"},"commit":{"message":"Delete workflow/chrom-seek.code-workspace","shortMessageHtmlLink":"Delete workflow/chrom-seek.code-workspace"}},{"before":"1779a9175dc30197285a039844a57b2deda005c1","after":"06fcb3c64a33c70a9018d3391a441332cbcdc7f9","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-31T22:04:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: realign promotertable cfchip inputs","shortMessageHtmlLink":"fix: realign promotertable cfchip inputs"}},{"before":"53a7949eef583a3c1552df2718cb35bcde6aafeb","after":"1779a9175dc30197285a039844a57b2deda005c1","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-31T19:47:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: realign uropa, promotertable2, diffbind outputs inputs","shortMessageHtmlLink":"fix: realign uropa, promotertable2, diffbind outputs inputs"}},{"before":"710cae0ea2a78ddd631dbeb87d2feb8086be13a0","after":"53a7949eef583a3c1552df2718cb35bcde6aafeb","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-31T18:37:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: turn off sicer involved inputs in cfchip pipeline","shortMessageHtmlLink":"fix: turn off sicer involved inputs in cfchip pipeline"}},{"before":"2f6aff81654684a00a78523db22b19f396e4ba19","after":"710cae0ea2a78ddd631dbeb87d2feb8086be13a0","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-31T18:33:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: comment out manorm rules for now","shortMessageHtmlLink":"fix: comment out manorm rules for now"}},{"before":"b54ac886c185f5fea2e2a4cb0c78620f6d07293a","after":"2f6aff81654684a00a78523db22b19f396e4ba19","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-29T16:42:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: testing corrections","shortMessageHtmlLink":"fix: testing corrections"}},{"before":"52cd4153fe916a2bc3eecf9a44320dc1986ac9e5","after":"b54ac886c185f5fea2e2a4cb0c78620f6d07293a","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-22T20:11:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: working out bugs discovered on AV","shortMessageHtmlLink":"fix: working out bugs discovered on AV"}},{"before":"af5e79149a8ce71fe2d961b80455b64506e1a751","after":"52cd4153fe916a2bc3eecf9a44320dc1986ac9e5","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-15T18:10:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"chore: make bin files executable, fix execution issues from test data runs","shortMessageHtmlLink":"chore: make bin files executable, fix execution issues from test data…"}},{"before":"65e3e3c2abd5f9ac069affb5dd1022f6b169d218","after":"af5e79149a8ce71fe2d961b80455b64506e1a751","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T19:42:19.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"chore: more spacing, fix reps flag reversal","shortMessageHtmlLink":"chore: more spacing, fix reps flag reversal"}},{"before":"c4e32cdd5e2e1cd57e59f9e659f468e34b287d99","after":"65e3e3c2abd5f9ac069affb5dd1022f6b169d218","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T18:05:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: reference global tmpdir and paired_end flag","shortMessageHtmlLink":"fix: reference global tmpdir and paired_end flag"}},{"before":"8f6cedd3c7800a064715dc1adfe70683667eddc5","after":"c4e32cdd5e2e1cd57e59f9e659f468e34b287d99","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T17:59:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"chore: spacing, refactor manorm rule","shortMessageHtmlLink":"chore: spacing, refactor manorm rule"}},{"before":"0e7ba2ec1a12e166fb4a738d42ba1598c2305bfe","after":"8f6cedd3c7800a064715dc1adfe70683667eddc5","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T15:18:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: fix single end functionality in bwa rule","shortMessageHtmlLink":"fix: fix single end functionality in bwa rule"}},{"before":"e5027d8b4de61df2fb05f5b4cceefeecb521c35b","after":"0e7ba2ec1a12e166fb4a738d42ba1598c2305bfe","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T14:58:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: indent","shortMessageHtmlLink":"fix: indent"}},{"before":"543121be62664525af9a0d58ea8f1ec20add6717","after":"e5027d8b4de61df2fb05f5b4cceefeecb521c35b","ref":"refs/heads/refactor_codebase","pushedAt":"2024-07-11T14:53:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rroutsong","name":"Ryan Routsong","path":"/rroutsong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/124383?s=80&v=4"},"commit":{"message":"fix: missing imports in peakcall rules","shortMessageHtmlLink":"fix: missing imports in peakcall rules"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEnFJvQgA","startCursor":null,"endCursor":null}},"title":"Activity · OpenOmics/chrom-seek"}