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Alternative KRAKEN/KAIJU databases from command line #32

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rroutsong opened this issue Jan 10, 2024 · 0 comments
Open

Alternative KRAKEN/KAIJU databases from command line #32

rroutsong opened this issue Jan 10, 2024 · 0 comments

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@rroutsong
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  • Command line argument to accept alternative KRAKEN2 database (other than the default in config/remote.json)
  • Command line argument to accept alternative Kaiju database (other than the default in config/remote.json)
  • Command line argument to accept alternative FastQ_Screen database (other than the default in config/remote.json)

Add flag to weave frontend cli, flow down to rules.
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@rroutsong