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taxon forwards missing from synth #116

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snacktavish opened this issue Apr 18, 2022 · 3 comments
Open

taxon forwards missing from synth #116

snacktavish opened this issue Apr 18, 2022 · 3 comments

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@snacktavish
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This is connected to the issue here,
#61

but more generally, taxon mappings of input trees that are forwarded appear to be pruned before synth sub problem solving.

e.g. The relationship at this node does not appear in the synth tree:
https://tree.opentreeoflife.org/curator/study/view/pg_2591?tab=home&tree=tree6024&node=node1032289

@snacktavish
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@mtholder
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Could be related to comment on gitter:
I have (yet another) conflict related q...
When I look at this tree in conflict view, I see that many nodes disagree with the synth tree... but when I look at the synth veiwer, it says this tree supports those nodes.
https://tree.opentreeoflife.org/curator/study/view/pg_2858?tab=home&tree=tree6642&conflict=synth

Am I getting tripped up by the "traversed by" vs actually supports?

@mtholder
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should be fixed in OpenTreeOfLife/peyotl@1483c45 but I still need to build the full tree to check.

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