api-test-lint-deploy.yaml

# This workflow runs tests and lint on pull requests that touch the api/
# project or its CI configuration.

name: 'API test/lint/deploy'

on:
  # Most of the time, we run on pull requests, which lets us handle external PRs
  pull_request:
    paths:
      - 'api/**/*'
      - 'Makefile'
      - 'shared-data/**/*'
      - '!shared-data/js/**'
      - 'hardware/**/*'
      - 'scripts/**/*.mk'
      - 'scripts/**/*.py'
      - '.github/workflows/api-test-lint-deploy.yaml'
      - '.github/actions/python/**/*'
      - '.github/workflows/utils.js'
  push:
    paths:
      - 'api/**'
      - 'Makefile'
      - 'shared-data/**/*'
      - '!shared-data/js/**/*'
      - 'hardware/**/*'
      - 'scripts/**/*.mk'
      - 'scripts/**/*.py'
      - '.github/workflows/api-test-lint-deploy.yaml'
      - '.github/actions/python/**/*'
      - '.github/workflows/utils.js'
    branches:
      - 'edge'
      - 'release'
      - '*hotfix*'
    tags:
      - 'v*'
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}-${{ github.ref_name != 'edge' || github.run_id}}-${{ github.ref_type != 'tag' || github.run_id }}
  cancel-in-progress: true

defaults:
  run:
    shell: bash

jobs:
  lint:
    name: 'opentrons package linting'
    timeout-minutes: 10
    runs-on: 'ubuntu-22.04'
    steps:
      - uses: 'actions/checkout@v4'
        with:
          fetch-depth: 0
      - uses: 'actions/setup-node@v4'
        with:
          node-version: '22.11.0'
      - uses: 'actions/setup-python@v4'
        with:
          python-version: '3.10'

      - uses: './.github/actions/python/setup'
        with:
          project: 'api'
      - name: Lint with opentrons_hardware
        run: make -C api lint
  test:
    name: 'opentrons package tests on ${{ matrix.os }}, python ${{ matrix.python }}'
    timeout-minutes: 30
    needs: [lint]
    strategy:
      matrix:
        os: ['windows-2022', 'ubuntu-22.04', 'macos-latest']
        python: ['3.10']
        with-ot-hardware: ['true', 'false']
        exclude:
          - os: 'windows-2022'
            with-ot-hardware: 'true'
          - os: 'macos-latest'
            with-ot-hardware: 'true'
    runs-on: '${{ matrix.os }}'
    steps:
      - uses: 'actions/checkout@v4'
        with:
          fetch-depth: 0
      # https://github.com/actions/checkout/issues/290
      - name: 'Fix actions/checkout odd handling of tags'
        if: startsWith(github.ref, 'refs/tags')
        run: |
          git fetch -f origin ${{ github.ref }}:${{ github.ref }}
          git checkout ${{ github.ref }}
      - uses: 'actions/setup-node@v4'
        with:
          node-version: '22.11.0'
      - uses: 'actions/setup-python@v4'
        with:
          python-version: ${{ matrix.python }}
      - name: 'set complex environment variables'
        uses: actions/github-script@v6
        with:
          script: |
            const { buildComplexEnvVars, } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`)
            buildComplexEnvVars(core, context)
      - uses: './.github/actions/python/setup'
        with:
          project: 'api'
          python-version: ${{ matrix.python }}
      - if: ${{ matrix.with-ot-hardware == 'false' }}
        name: Remove OT-3 hardware package
        run: make -C api setup-ot2
        env:
          OT_VIRTUALENV_VERSION: ${{ matrix.python }}
      - if: ${{ matrix.with-ot-hardware == 'false' }}
        name: Test without opentrons_hardware
        run: make -C api test-ot2
      - if: ${{ matrix.with-ot-hardware == 'true' }}
        name: Test with opentrons_hardware
        run: make -C api test-cov
      - name: Ensure assets build
        run: make -C api sdist wheel
      - name: Upload coverage report
        uses: 'codecov/codecov-action@v3'
        with:
          files: ./api/coverage.xml
          flags: api

  test-package:
    name: 'opentrons package tests on ${{ matrix.os }}, python ${{ matrix.python }}'
    timeout-minutes: 5
    strategy:
      matrix:
        os: ['windows-2022', 'ubuntu-22.04', 'macos-latest']
        python: ['3.10']
    runs-on: '${{ matrix.os }}'
    steps:
      - uses: 'actions/checkout@v4'
      - name: 'Fix actions/checkout odd handling of tags'
        if: startsWith(github.ref, 'refs/tags')
        run: |
          git fetch -f origin ${{ github.ref }}:${{ github.ref }}
          git checkout ${{ github.ref }}
      - name: Install UV
        uses: astral-sh/setup-uv@v4
        id: setup-uv
      - name: Install Python
        run: uv python install ${{ matrix.python }}
      - name: Install Opentrons
        shell: bash
        run: |
          uv python pin '${{ matrix.python }}'
          uv venv
          uv pip install git+https://github.com/Opentrons/opentrons@${{ github.head_ref }}#subdirectory=api
          uv pip list
      - name: Simulate protocol
        shell: bash
        run: |
          uv run opentrons_simulate --help
          uv run opentrons_simulate analyses-snapshot-testing/files/protocols/Flex_S_v2_19_Illumina_DNA_Prep_48x.py


  deploy:
    name: 'deploy opentrons package'
    needs: [test]
    runs-on: 'ubuntu-22.04'
    if: github.event_name == 'push'
    steps:
      - uses: 'actions/checkout@v4'
        with:
          fetch-depth: 0
      # https://github.com/actions/checkout/issues/290
      - name: 'Fix actions/checkout odd handling of tags'
        if: startsWith(github.ref, 'refs/tags')
        run: |
          git fetch -f origin ${{ github.ref }}:${{ github.ref }}
          git checkout ${{ github.ref }}
      - uses: 'actions/setup-node@v4'
        with:
          node-version: '22.11.0'
      - uses: 'actions/setup-python@v4'
        with:
          python-version: '3.10'
      - name: 'set complex environment variables'
        uses: actions/github-script@v6
        with:
          script: |
            const { buildComplexEnvVars, } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`)
            buildComplexEnvVars(core, context)
      - uses: './.github/actions/python/setup'
        with:
          project: 'api'
      # creds and repository configuration for deploying python wheels
      - if: ${{ !env.OT_TAG }}
        name: 'upload to test pypi'
        uses: './.github/actions/python/pypi-deploy'
        with:
          project: 'api'
          repository_url: 'https://test.pypi.org/legacy/'
          password: '${{ secrets.TEST_PYPI_DEPLOY_TOKEN_OPENTRONS }}'
      - if: startsWith(env.OT_TAG, 'v')
        name: 'upload to real pypi'
        uses: './.github/actions/python/pypi-deploy'
        with:
          project: 'api'
          repository_url: 'https://upload.pypi.org/legacy/'
          password: '${{ secrets.PYPI_DEPLOY_TOKEN_OPENTRONS }}'