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}, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "tipDiameter": 0, - "tipLength": 51.83, - "tipVolume": 300 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-19", - "notes": [], - "params": { - "flowRate": 150.0, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 100.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 100.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-19", - "notes": [], - "params": { - "flowRate": 300.0, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 100.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "D5" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 100.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dropTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DROP_TIP-19", - "notes": [], - "params": { - "alternateDropLocation": false, - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "default" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - } - ], + "commands": [], "config": { "protocolType": "json", "schemaVersion": 3 }, "createdAt": "TIMESTAMP", - "errors": [], + "errors": [ + { + "createdAt": "TIMESTAMP", + "detail": "Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "UnexpectedAnalysisError", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "jsonschema.exceptions._RefResolutionError: Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": { + "args": "(\"Unresolvable JSON pointer: 'definitions/slot'\",)", + "class": "_RefResolutionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/cli/analyze.py\", line N, in _do_analyze\n await orchestrator.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/run_orchestrator.py\", line N, in load\n await self._protocol_runner.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/protocol_runner.py\", line N, in load\n protocol = self._protocol_file_reader.read(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/python_protocol_wrappers.py\", line N, in read\n return parse(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in parse\n return _parse_json(protocol_file, filename)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in _parse_json\n version, validated = validate_json(protocol_json)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in validate_json\n jsonschema.validate(protocol_json, protocol_schema, resolver=resolver)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in validate\n error = exceptions.best_match(validator.iter_errors(instance))\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/exceptions.py\", line N, in best_match\n best = next(errors, None)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in iter_errors\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in patternProperties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in ref\n yield from validator._validate_reference(ref=ref, instance=instance)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in _validate_reference\n scope, resolved = resolve(ref)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve\n return url, self._remote_cache(url)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_from_url\n return self.resolve_fragment(document, fragment)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n raise exceptions._RefResolutionError(\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + }, + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + } + ] + } + ] + } + ], "files": [ { "name": "OT2_S_v3_P300SGen1_None_Gen1PipetteSimple.json", "role": "main" } ], - "labware": [ - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "displayName": "Trash", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_10ul/1", - "displayName": "Opentrons 96 Tip Rack 10 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_10ul", - "location": { - "slotName": "1" - } - }, - { - "definitionUri": "opentrons/nest_1_reservoir_195ml/1", - "displayName": "NEST 1 Well Reservoir 195 mL", - "id": "UUID", - "loadName": "nest_1_reservoir_195ml", - "location": { - "slotName": "5" - } - }, - { - "definitionUri": "opentrons/usascientific_96_wellplate_2.4ml_deep/1", - "displayName": "USA Scientific 96 Deep Well Plate 2.4 mL", - "id": "UUID", - "loadName": "usascientific_96_wellplate_2.4ml_deep", - "location": { - "slotName": "4" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_300ul/1", - "displayName": "Opentrons 96 Tip Rack 300 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_300ul", - "location": { - "slotName": "6" - } - } - ], + "labware": [], "liquids": [], "metadata": { "author": "", @@ -6446,14 +80,8 @@ "tags": [] }, "modules": [], - "pipettes": [ - { - "id": "UUID", - "mount": "right", - "pipetteName": "p300_single" - } - ], - "result": "ok", + "pipettes": [], + "result": "not-ok", "robotType": "OT-2 Standard", "runTimeParameters": [] } diff --git a/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[c9e6e3d59d][OT2_X_v4_P300M_P20S_MM_TC1_TM_e2eTests].json b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[c9e6e3d59d][OT2_X_v4_P300M_P20S_MM_TC1_TM_e2eTests].json index 27c588074b3..e6448bab6a2 100644 --- a/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[c9e6e3d59d][OT2_X_v4_P300M_P20S_MM_TC1_TM_e2eTests].json +++ b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[c9e6e3d59d][OT2_X_v4_P300M_P20S_MM_TC1_TM_e2eTests].json @@ -1,7068 +1,5 @@ { - "commands": [ - { - "commandType": "home", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "50c7ae73a4e3f7129874f39dfb514803", - "notes": [], - "params": {}, - "result": {}, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadPipette", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_PIPETTE-0", - "notes": [], - "params": { - "mount": "left", - "pipetteName": "p300_multi_gen2" - }, - "result": { - "pipetteId": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadPipette", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_PIPETTE-1", - "notes": [], - "params": { - "mount": "right", - "pipetteName": "p20_single_gen2" - }, - "result": { - "pipetteId": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-0", - "notes": [], - "params": { - "location": { - "slotName": "1" - }, - "model": "magneticModuleV2", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 124.875, - "y": 2.75, - "z": 82.25 - }, - "compatibleWith": [], - "dimensions": { - "bareOverallHeight": 110.152, - "overLabwareHeight": 4.052 - }, - "displayName": "Magnetic Module GEN2", - "gripperOffsets": {}, - "labwareOffset": { - "x": -1.175, - "y": -0.125, - "z": 82.25 - }, - "model": "magneticModuleV2", - "moduleType": "magneticModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": { - "ot2_short_trash": { - "3": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot2_standard": { - "3": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - } - } - }, - "model": "magneticModuleV2", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-1", - "notes": [], - "params": { - "location": { - "slotName": "3" - }, - "model": "temperatureModuleV2", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 11.7, - "y": 8.75, - "z": 80.09 - }, - "compatibleWith": [ - "temperatureModuleV1" - ], - "dimensions": { - "bareOverallHeight": 84.0, - "overLabwareHeight": 0.0 - }, - "displayName": "Temperature Module GEN2", - "gripperOffsets": { - "default": { - "dropOffset": { - "x": 0.0, - "y": 0.0, - "z": 1.0 - }, - "pickUpOffset": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - } - }, - "labwareOffset": { - "x": -1.45, - "y": -0.15, - "z": 80.09 - }, - "model": "temperatureModuleV2", - "moduleType": "temperatureModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": { - "ot2_short_trash": { - "3": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot2_standard": { - "3": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot3_standard": { - "A1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "A3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - } - } - } - }, - "model": "temperatureModuleV2", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-2", - "notes": [], - "params": { - "location": { - "slotName": "7" - }, - "model": "thermocyclerModuleV1", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 14.4, - "y": 64.93, - "z": 97.8 - }, - "compatibleWith": [ - "thermocyclerModuleV1" - ], - "dimensions": { - "bareOverallHeight": 98.0, - "lidHeight": 37.7, - "overLabwareHeight": 0.0 - }, - "displayName": "Thermocycler Module GEN1", - "gripperOffsets": {}, - "labwareOffset": { - "x": 0.0, - "y": 82.56, - "z": 97.8 - }, - "model": "thermocyclerModuleV1", - "moduleType": "thermocyclerModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": {} - }, - "model": "thermocyclerModuleV1", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadLabware", - "completedAt": "TIMESTAMP", - 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"x": 50.38, - "y": 11.24, - "z": 25.49 - }, - "H6": { - "depth": 39.2, - "diameter": 3.27, - "shape": "circular", - "totalLiquidVolume": 20, - "x": 59.38, - "y": 11.24, - "z": 25.49 - }, - "H7": { - "depth": 39.2, - "diameter": 3.27, - "shape": "circular", - "totalLiquidVolume": 20, - "x": 68.38, - "y": 11.24, - "z": 25.49 - }, - "H8": { - "depth": 39.2, - "diameter": 3.27, - "shape": "circular", - "totalLiquidVolume": 20, - "x": 77.38, - "y": 11.24, - "z": 25.49 - }, - "H9": { - "depth": 39.2, - "diameter": 3.27, - "shape": "circular", - "totalLiquidVolume": 20, - "x": 86.38, - "y": 11.24, - "z": 25.49 - } - } - }, - "labwareId": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "pickUpTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.PICK_UP_TIP-0", - "notes": [], - "params": { - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "tipDiameter": 0, - "tipLength": 51.099999999999994, - "tipVolume": 300 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "error": { - "createdAt": "TIMESTAMP", - "detail": "Cannot aspirate more than pipette max volume", - "errorCode": "4000", - "errorInfo": {}, - "errorType": "LegacyContextCommandError", - "id": "UUID", - "isDefined": false, - "wrappedErrors": [ - { - "createdAt": "TIMESTAMP", - "detail": "AssertionError: Cannot aspirate more than pipette max volume", - "errorCode": "4000", - "errorInfo": { - "args": "('Cannot aspirate more than pipette max volume',)", - "class": "AssertionError", - "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/legacy_commands/publisher.py\", line N, in publish_context\n yield\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/instrument_context.py\", line N, in aspirate\n self._core.aspirate(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py\", line N, in aspirate\n new_volume <= self._pipette_dict[\"working_volume\"]\n" - }, - "errorType": "PythonException", - "id": "UUID", - "isDefined": false, - "wrappedErrors": [] - } - ] - }, - "id": "UUID", - "key": "command.ASPIRATE-0", - "notes": [], - "params": { - "flowRate": 94.0, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 1000.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A1" - }, - "startedAt": "TIMESTAMP", - "status": "failed" - } - ], + "commands": [], "config": { "protocolType": "json", "schemaVersion": 4 @@ -7071,26 +8,55 @@ "errors": [ { "createdAt": "TIMESTAMP", - "detail": "Cannot aspirate more than pipette max volume", + "detail": "Unresolvable JSON pointer: 'definitions/slot'", "errorCode": "4000", "errorInfo": {}, - "errorType": "UnexpectedProtocolError", + "errorType": "UnexpectedAnalysisError", "id": "UUID", "isDefined": false, "wrappedErrors": [ { "createdAt": "TIMESTAMP", - "detail": "AssertionError: Cannot aspirate more than pipette max volume", + "detail": "jsonschema.exceptions._RefResolutionError: Unresolvable JSON pointer: 'definitions/slot'", "errorCode": "4000", "errorInfo": { - "args": "('Cannot aspirate more than pipette max volume',)", - "class": "AssertionError", - "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/task_queue.py\", line N, in _run\n await self._run_func()\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/task_queue.py\", line N, in _do_run\n await func(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/protocol_runner.py\", line N, in run_func\n await self._protocol_executor.execute(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/python_protocol_wrappers.py\", line N, in execute\n await to_thread.run_sync(\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/to_thread.py\", line N, in run_sync\n return await get_asynclib().run_sync_in_worker_thread(\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line N, in run_sync_in_worker_thread\n return await future\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line N, in run\n result = context.run(func, *args)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute.py\", line N, in run_protocol\n execute_json_v4.dispatch_json(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_json_v4.py\", line N, in dispatch_json\n pipette_command_map[command_type]( # type: ignore\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_json_v3.py\", line N, in _aspirate\n pipette.aspirate(volume, location)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line N, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/instrument_context.py\", line N, in aspirate\n self._core.aspirate(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py\", line N, in aspirate\n new_volume <= self._pipette_dict[\"working_volume\"]\n" + "args": "(\"Unresolvable JSON pointer: 'definitions/slot'\",)", + "class": "_RefResolutionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/cli/analyze.py\", line N, in _do_analyze\n await orchestrator.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/run_orchestrator.py\", line N, in load\n await self._protocol_runner.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/protocol_runner.py\", line N, in load\n protocol = self._protocol_file_reader.read(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/python_protocol_wrappers.py\", line N, in read\n return parse(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in parse\n return _parse_json(protocol_file, filename)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in _parse_json\n version, validated = validate_json(protocol_json)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in validate_json\n jsonschema.validate(protocol_json, protocol_schema, resolver=resolver)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in validate\n error = exceptions.best_match(validator.iter_errors(instance))\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/exceptions.py\", line N, in best_match\n best = next(errors, None)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in iter_errors\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in patternProperties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in ref\n yield from validator._validate_reference(ref=ref, instance=instance)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in _validate_reference\n scope, resolved = resolve(ref)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve\n return url, self._remote_cache(url)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_from_url\n return self.resolve_fragment(document, fragment)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n raise exceptions._RefResolutionError(\n" }, "errorType": "PythonException", "id": "UUID", "isDefined": false, - "wrappedErrors": [] + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + }, + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + } + ] } ] } @@ -7101,88 +67,7 @@ "role": "main" } ], - "labware": [ - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "displayName": "Trash", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_10ul/1", - "displayName": "Opentrons 96 Tip Rack 10 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_10ul", - "location": { - "slotName": "2" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_300ul/1", - "displayName": "Opentrons 96 Tip Rack 300 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_300ul", - "location": { - "slotName": "4" - } - }, - { - "definitionUri": "opentrons/agilent_1_reservoir_290ml/1", - "displayName": "A1", - "id": "UUID", - "loadName": "agilent_1_reservoir_290ml", - "location": { - "slotName": "5" - } - }, - { - "definitionUri": "opentrons/nest_12_reservoir_15ml/1", - "displayName": "A2", - "id": "UUID", - "loadName": "nest_12_reservoir_15ml", - "location": { - "slotName": "6" - } - }, - { - "definitionUri": "opentrons/nest_96_wellplate_100ul_pcr_full_skirt/1", - "displayName": "Mag Labware", - "id": "UUID", - "loadName": "nest_96_wellplate_100ul_pcr_full_skirt", - "location": { - "moduleId": "UUID" - } - }, - { - "definitionUri": "opentrons/opentrons_96_aluminumblock_nest_wellplate_100ul/1", - "displayName": "TempDeck LW", - "id": "UUID", - "loadName": "opentrons_96_aluminumblock_nest_wellplate_100ul", - "location": { - "moduleId": "UUID" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_20ul/1", - "displayName": "Opentrons 96 Tip Rack 20 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_20ul", - "location": { - "slotName": "9" - } - } - ], + "labware": [], "liquids": [], "metadata": { "author": "NN MM", @@ -7194,44 +79,8 @@ "subcategory": null, "tags": [] }, - "modules": [ - { - "id": "UUID", - "location": { - "slotName": "1" - }, - "model": "magneticModuleV2", - "serialNumber": "UUID" - }, - { - "id": "UUID", - "location": { - "slotName": "3" - }, - "model": "temperatureModuleV2", - "serialNumber": "UUID" - }, - { - "id": "UUID", - "location": { - "slotName": "7" - }, - "model": "thermocyclerModuleV1", - "serialNumber": "UUID" - } - ], - "pipettes": [ - { - "id": "UUID", - "mount": "left", - "pipetteName": "p300_multi_gen2" - }, - { - "id": "UUID", - "mount": "right", - "pipetteName": "p20_single_gen2" - } - ], + "modules": [], + "pipettes": [], "result": "not-ok", "robotType": "OT-2 Standard", "runTimeParameters": [] diff --git a/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[e4660ca6df][OT2_S_v4_P300S_None_MM_TM_TM_MOAMTemps].json b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[e4660ca6df][OT2_S_v4_P300S_None_MM_TM_TM_MOAMTemps].json index 2225d4e28a5..0b61e0a1a44 100644 --- a/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[e4660ca6df][OT2_S_v4_P300S_None_MM_TM_TM_MOAMTemps].json +++ b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[e4660ca6df][OT2_S_v4_P300S_None_MM_TM_TM_MOAMTemps].json @@ -1,2583 +1,73 @@ { - "commands": [ - { - "commandType": "home", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "50c7ae73a4e3f7129874f39dfb514803", - "notes": [], - "params": {}, - "result": {}, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadPipette", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_PIPETTE-0", - "notes": [], - "params": { - "mount": "left", - "pipetteName": "p300_single_gen2" - }, - "result": { - "pipetteId": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-0", - "notes": [], - "params": { - "location": { - "slotName": "1" - }, - "model": "magneticModuleV2", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 124.875, - "y": 2.75, - "z": 82.25 - }, - "compatibleWith": [], - "dimensions": { - "bareOverallHeight": 110.152, - "overLabwareHeight": 4.052 - }, - "displayName": "Magnetic Module GEN2", - "gripperOffsets": {}, - "labwareOffset": { - "x": -1.175, - "y": -0.125, - "z": 82.25 - }, - "model": "magneticModuleV2", - "moduleType": "magneticModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": { - "ot2_short_trash": { - "3": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.3 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot2_standard": { - "3": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - 0, - 0, - 0.25 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - } - } - }, - "model": "magneticModuleV2", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-1", - "notes": [], - "params": { - "location": { - "slotName": "3" - }, - "model": "temperatureModuleV2", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 11.7, - "y": 8.75, - "z": 80.09 - }, - "compatibleWith": [ - "temperatureModuleV1" - ], - "dimensions": { - "bareOverallHeight": 84.0, - "overLabwareHeight": 0.0 - }, - "displayName": "Temperature Module GEN2", - "gripperOffsets": { - "default": { - "dropOffset": { - "x": 0.0, - "y": 0.0, - "z": 1.0 - }, - "pickUpOffset": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - } - }, - "labwareOffset": { - "x": -1.45, - "y": -0.15, - "z": 80.09 - }, - "model": "temperatureModuleV2", - "moduleType": "temperatureModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": { - "ot2_short_trash": { - "3": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot2_standard": { - "3": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot3_standard": { - "A1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "A3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - } - } - } - }, - "model": "temperatureModuleV2", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadModule", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_MODULE-2", - "notes": [], - "params": { - "location": { - "slotName": "6" - }, - "model": "temperatureModuleV2", - "moduleId": "UUID" - }, - "result": { - "definition": { - "calibrationPoint": { - "x": 11.7, - "y": 8.75, - "z": 80.09 - }, - "compatibleWith": [ - "temperatureModuleV1" - ], - "dimensions": { - "bareOverallHeight": 84.0, - "overLabwareHeight": 0.0 - }, - "displayName": "Temperature Module GEN2", - "gripperOffsets": { - "default": { - "dropOffset": { - "x": 0.0, - "y": 0.0, - "z": 1.0 - }, - "pickUpOffset": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - } - }, - "labwareOffset": { - "x": -1.45, - "y": -0.15, - "z": 80.09 - }, - "model": "temperatureModuleV2", - "moduleType": "temperatureModuleType", - "otSharedSchema": "module/schemas/2", - "quirks": [], - "slotTransforms": { - "ot2_short_trash": { - "3": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.15, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot2_standard": { - "3": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "6": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - }, - "9": { - "labwareOffset": [ - [ - -1, - -0.3, - 0, - 0 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ] - ] - } - }, - "ot3_standard": { - "A1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "A3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "B3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "C3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D1": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - }, - "D3": { - "labwareOffset": [ - [ - -71.09, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0, - 1 - ], - [ - 0, - 0, - 0.15, - 1 - ], - [ - 0, - 0, - 1, - 1.45 - ] - ] - } - } - } - }, - "model": "temperatureModuleV2", - "moduleId": "UUID", - "serialNumber": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "loadLabware", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_LABWARE-0", - "notes": [], - "params": { - "displayName": "Trash", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - }, - "namespace": "opentrons", - "version": 1 - }, - "result": { - "definition": { - "allowedRoles": [], - "brand": { - "brand": "Opentrons" - }, - "cornerOffsetFromSlot": { - "x": 0, - "y": 0, - "z": 0 - }, - "dimensions": { - "xDimension": 172.86, - "yDimension": 165.86, - "zDimension": 82 - }, - "gripperOffsets": {}, - "groups": [ - { - "metadata": {}, - "wells": [ - "A1" - ] - } - ], - "metadata": { - "displayCategory": "trash", - "displayName": "Opentrons Fixed Trash", - "displayVolumeUnits": "mL", - "tags": [] - }, - "namespace": "opentrons", - "ordering": [ - [ - "A1" - ] - ], - "parameters": { - "format": "trash", - "isMagneticModuleCompatible": false, - "isTiprack": false, - "loadName": "opentrons_1_trash_1100ml_fixed", - "quirks": [ - "centerMultichannelOnWells", - "fixedTrash", - "touchTipDisabled" - ] - }, - "schemaVersion": 2, - "stackingOffsetWithLabware": {}, - "stackingOffsetWithModule": {}, - "version": 1, - "wells": { - "A1": { - "depth": 0, - "shape": "rectangular", - "totalLiquidVolume": 1100000, - "x": 82.84, - "xDimension": 107.11, - "y": 80, - "yDimension": 165.67, - "z": 82 - } - } - }, - "labwareId": "UUID" - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, + "commands": [], + "config": { + "protocolType": "json", + "schemaVersion": 4 + }, + "createdAt": "TIMESTAMP", + "errors": [ { - "commandType": "loadLabware", - "completedAt": "TIMESTAMP", "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "commands.LOAD_LABWARE-1", - "notes": [], - "params": { - "displayName": "Opentrons 96 Tip Rack 300 µL", - "loadName": "opentrons_96_tiprack_300ul", - "location": { - "slotName": "5" - }, - "namespace": "opentrons", - "version": 1 - }, - "result": { - "definition": { - "allowedRoles": [], - "brand": { - "brand": "Opentrons", - "brandId": [], - "links": [ - "https://shop.opentrons.com/collections/opentrons-tips/products/opentrons-300ul-tips" - ] - }, - "cornerOffsetFromSlot": { - "x": 0, - "y": 0, - "z": 0 - }, - "dimensions": { - "xDimension": 127.76, - "yDimension": 85.48, - "zDimension": 64.49 - }, - "gripperOffsets": {}, - "groups": [ + "detail": "Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "UnexpectedAnalysisError", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "jsonschema.exceptions._RefResolutionError: Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": { + "args": "(\"Unresolvable JSON pointer: 'definitions/slot'\",)", + "class": "_RefResolutionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/cli/analyze.py\", line N, in _do_analyze\n await orchestrator.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/run_orchestrator.py\", line N, in load\n await self._protocol_runner.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/protocol_runner.py\", line N, in load\n protocol = self._protocol_file_reader.read(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/python_protocol_wrappers.py\", line N, in read\n return parse(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in parse\n return _parse_json(protocol_file, filename)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in _parse_json\n version, validated = validate_json(protocol_json)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in validate_json\n jsonschema.validate(protocol_json, protocol_schema, resolver=resolver)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in validate\n error = exceptions.best_match(validator.iter_errors(instance))\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/exceptions.py\", line N, in best_match\n best = next(errors, None)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in iter_errors\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in patternProperties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in ref\n yield from validator._validate_reference(ref=ref, instance=instance)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in _validate_reference\n scope, resolved = resolve(ref)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve\n return url, self._remote_cache(url)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_from_url\n return self.resolve_fragment(document, fragment)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n raise exceptions._RefResolutionError(\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ { - "metadata": {}, - "wells": [ - "A1", - "A10", - "A11", - "A12", - "A2", - "A3", - "A4", - "A5", - "A6", - "A7", - "A8", - "A9", - "B1", - "B10", - "B11", - "B12", - "B2", - "B3", - "B4", - "B5", - "B6", - "B7", - "B8", - "B9", - "C1", - "C10", - "C11", - "C12", - "C2", - "C3", - "C4", - "C5", - "C6", - "C7", - "C8", - "C9", - "D1", - "D10", - "D11", - "D12", - "D2", - "D3", - "D4", - "D5", - "D6", - "D7", - "D8", - "D9", - "E1", - "E10", - "E11", - "E12", - "E2", - "E3", - "E4", - "E5", - "E6", - "E7", - "E8", - "E9", - "F1", - "F10", - "F11", - "F12", - "F2", - "F3", - "F4", - "F5", - "F6", - "F7", - "F8", - "F9", - "G1", - "G10", - "G11", - "G12", - "G2", - "G3", - "G4", - "G5", - "G6", - "G7", - "G8", - "G9", - "H1", - "H10", - "H11", - "H12", - "H2", - "H3", - "H4", - "H5", - "H6", - "H7", - "H8", - "H9" - ] - } - ], - "metadata": { - "displayCategory": "tipRack", - "displayName": "Opentrons 96 Tip Rack 300 µL", - "displayVolumeUnits": "µL", - "tags": [] - }, - "namespace": "opentrons", - "ordering": [ - [ - "A1", - "B1", - "C1", - "D1", - "E1", - "F1", - "G1", - "H1" - ], - [ - "A10", - "B10", - "C10", - "D10", - "E10", - "F10", - "G10", - "H10" - ], - [ - "A11", - "B11", - "C11", - "D11", - "E11", - "F11", - "G11", - "H11" - ], - [ - "A12", - "B12", - "C12", - "D12", - "E12", - "F12", - "G12", - "H12" - ], - [ - "A2", - "B2", - "C2", - "D2", - "E2", - "F2", - "G2", - "H2" - ], - [ - "A3", - "B3", - "C3", - "D3", - "E3", - "F3", - "G3", - "H3" - ], - [ - "A4", - "B4", - "C4", - "D4", - "E4", - "F4", - "G4", - "H4" - ], - [ - "A5", - "B5", - "C5", - "D5", - "E5", - "F5", - "G5", - "H5" - ], - [ - "A6", - "B6", - "C6", - "D6", - "E6", - "F6", - "G6", - "H6" - ], - [ - "A7", - "B7", - "C7", - "D7", - "E7", - "F7", - "G7", - "H7" - ], - [ - "A8", - "B8", - "C8", - "D8", - "E8", - "F8", - "G8", - "H8" - ], - [ - "A9", - "B9", - "C9", - "D9", - "E9", - "F9", - "G9", - "H9" - ] - ], - "parameters": { - "format": "96Standard", - "isMagneticModuleCompatible": false, - "isTiprack": true, - "loadName": "opentrons_96_tiprack_300ul", - "tipLength": 59.3, - "tipOverlap": 7.47 - }, - "schemaVersion": 2, - "stackingOffsetWithLabware": {}, - "stackingOffsetWithModule": {}, - "version": 1, - "wells": { - "A1": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 14.38, - "y": 74.24, - "z": 5.39 - }, - "A10": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 95.38, - "y": 74.24, - "z": 5.39 - }, - "A11": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 104.38, - "y": 74.24, - "z": 5.39 - }, - "A12": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 113.38, - "y": 74.24, - "z": 5.39 - }, - "A2": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 23.38, - "y": 74.24, - "z": 5.39 - }, - "A3": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 32.38, - "y": 74.24, - "z": 5.39 - }, - "A4": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 41.38, - "y": 74.24, - "z": 5.39 - }, - "A5": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 50.38, - "y": 74.24, - "z": 5.39 - }, - "A6": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 59.38, - "y": 74.24, - "z": 5.39 - }, - "A7": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 68.38, - "y": 74.24, - "z": 5.39 - }, - "A8": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 77.38, - "y": 74.24, - "z": 5.39 - }, - "A9": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 86.38, - "y": 74.24, - "z": 5.39 - }, - "B1": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 14.38, - "y": 65.24, - "z": 5.39 - }, - "B10": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 95.38, - "y": 65.24, - "z": 5.39 - }, - "B11": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 104.38, - "y": 65.24, - "z": 5.39 - }, - "B12": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 113.38, - "y": 65.24, - "z": 5.39 - }, - "B2": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 23.38, - "y": 65.24, - "z": 5.39 - }, - "B3": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 32.38, - "y": 65.24, - "z": 5.39 - }, - "B4": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 41.38, - "y": 65.24, - "z": 5.39 - }, - "B5": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 50.38, - "y": 65.24, - "z": 5.39 - }, - "B6": { - "depth": 59.3, - "diameter": 5.23, - "shape": "circular", - "totalLiquidVolume": 300, - "x": 59.38, - "y": 65.24, - "z": 5.39 - }, - "B7": { - "depth": 59.3, - "diameter": 5.23, - "shape": 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"top" - }, - "wellName": "G12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dropTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DROP_TIP-7", - "notes": [], - "params": { - "alternateDropLocation": false, - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "default" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "pickUpTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.PICK_UP_TIP-8", - "notes": [], - "params": { - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "tipDiameter": 0, - "tipLength": 30.950000000000003, - "tipVolume": 20 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-36", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-36", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-37", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-37", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-38", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-38", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-39", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-39", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-40", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-40", - "notes": [], - "params": { - "flowRate": 3.78, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 20.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "H12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 20.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dropTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DROP_TIP-8", - "notes": [], - "params": { - "alternateDropLocation": false, - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "default" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "pickUpTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.PICK_UP_TIP-9", - "notes": [], - "params": { - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A2" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "tipDiameter": 0, - "tipLength": 51.099999999999994, - "tipVolume": 300 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "aspirate", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.ASPIRATE-41", - "notes": [], - "params": { - "flowRate": 94.0, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 100.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A12" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 100.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dispense", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DISPENSE-41", - "notes": [], - "params": { - "flowRate": 94.0, - "labwareId": "UUID", - "pipetteId": "UUID", - "volume": 100.0, - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "top" - }, - "wellName": "A6" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - }, - "volume": 100.0 - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - }, - { - "commandType": "dropTip", - "completedAt": "TIMESTAMP", - "createdAt": "TIMESTAMP", - "id": "UUID", - "key": "command.DROP_TIP-9", - "notes": [], - "params": { - "alternateDropLocation": false, - "labwareId": "UUID", - "pipetteId": "UUID", - "wellLocation": { - "offset": { - "x": 0, - "y": 0, - "z": 0 - }, - "origin": "default" - }, - "wellName": "A1" - }, - "result": { - "position": { - "x": 0.0, - "y": 0.0, - "z": 0.0 - } - }, - "startedAt": "TIMESTAMP", - "status": "succeeded" - } - ], + "commands": [], "config": { "protocolType": "json", "schemaVersion": 4 }, "createdAt": "TIMESTAMP", - "errors": [], + "errors": [ + { + "createdAt": "TIMESTAMP", + "detail": "Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "UnexpectedAnalysisError", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "jsonschema.exceptions._RefResolutionError: Unresolvable JSON pointer: 'definitions/slot'", + "errorCode": "4000", + "errorInfo": { + "args": "(\"Unresolvable JSON pointer: 'definitions/slot'\",)", + "class": "_RefResolutionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/cli/analyze.py\", line N, in _do_analyze\n await orchestrator.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/run_orchestrator.py\", line N, in load\n await self._protocol_runner.load(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/protocol_runner.py\", line N, in load\n protocol = self._protocol_file_reader.read(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/python_protocol_wrappers.py\", line N, in read\n return parse(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in parse\n return _parse_json(protocol_file, filename)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in _parse_json\n version, validated = validate_json(protocol_json)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/parse.py\", line N, in validate_json\n jsonschema.validate(protocol_json, protocol_schema, resolver=resolver)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in validate\n error = exceptions.best_match(validator.iter_errors(instance))\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/exceptions.py\", line N, in best_match\n best = next(errors, None)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in iter_errors\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in patternProperties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in properties\n yield from validator.descend(\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in descend\n for error in errors:\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/_keywords.py\", line N, in ref\n yield from validator._validate_reference(ref=ref, instance=instance)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in _validate_reference\n scope, resolved = resolve(ref)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve\n return url, self._remote_cache(url)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_from_url\n return self.resolve_fragment(document, fragment)\n\n File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n raise exceptions._RefResolutionError(\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [ + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + }, + { + "createdAt": "TIMESTAMP", + "detail": "KeyError: 'slot'", + "errorCode": "4000", + "errorInfo": { + "args": "('slot',)", + "class": "KeyError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/jsonschema/validators.py\", line N, in resolve_fragment\n document = document[part]\n" + }, + "errorType": "PythonException", + "id": "UUID", + "isDefined": false, + "wrappedErrors": [] + } + ] + } + ] + } + ], "files": [ { "name": "OT2_S_v4_P300M_P20S_MM_TM_TC1_PD40.json", "role": "main" } ], - "labware": [ - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", - "displayName": "Trash", - "id": "UUID", - "loadName": "opentrons_1_trash_1100ml_fixed", - "location": { - "slotName": "12" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_10ul/1", - "displayName": "Opentrons 96 Tip Rack 10 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_10ul", - "location": { - "slotName": "2" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_300ul/1", - "displayName": "Opentrons 96 Tip Rack 300 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_300ul", - "location": { - "slotName": "4" - } - }, - { - "definitionUri": "opentrons/agilent_1_reservoir_290ml/1", - "displayName": "A1", - "id": "UUID", - "loadName": "agilent_1_reservoir_290ml", - "location": { - "slotName": "5" - } - }, - { - "definitionUri": "opentrons/nest_12_reservoir_15ml/1", - "displayName": "A2", - "id": "UUID", - "loadName": "nest_12_reservoir_15ml", - "location": { - "slotName": "6" - } - }, - { - "definitionUri": "opentrons/nest_96_wellplate_100ul_pcr_full_skirt/1", - "displayName": "Mag Labware", - "id": "UUID", - "loadName": "nest_96_wellplate_100ul_pcr_full_skirt", - "location": { - "moduleId": "UUID" - } - }, - { - "definitionUri": "opentrons/opentrons_96_aluminumblock_nest_wellplate_100ul/1", - "displayName": "TempDeck LW", - "id": "UUID", - "loadName": "opentrons_96_aluminumblock_nest_wellplate_100ul", - "location": { - "moduleId": "UUID" - } - }, - { - "definitionUri": "opentrons/opentrons_96_tiprack_20ul/1", - "displayName": "Opentrons 96 Tip Rack 20 µL", - "id": "UUID", - "loadName": "opentrons_96_tiprack_20ul", - "location": { - "slotName": "9" - } - } - ], + "labware": [], "liquids": [], "metadata": { "author": "NN MM", @@ -10542,45 +79,9 @@ "subcategory": null, "tags": [] }, - "modules": [ - { - "id": "UUID", - "location": { - "slotName": "1" - }, - "model": "magneticModuleV2", - "serialNumber": "UUID" - }, - { - "id": "UUID", - "location": { - "slotName": "3" - }, - "model": "temperatureModuleV2", - "serialNumber": "UUID" - }, - { - "id": "UUID", - "location": { - "slotName": "7" - }, - "model": "thermocyclerModuleV1", - "serialNumber": "UUID" - } - ], - "pipettes": [ - { - "id": "UUID", - "mount": "left", - "pipetteName": "p300_multi_gen2" - }, - { - "id": "UUID", - "mount": "right", - "pipetteName": "p20_single_gen2" - } - ], - "result": "ok", + "modules": [], + "pipettes": [], + "result": "not-ok", "robotType": "OT-2 Standard", "runTimeParameters": [] }