| Version | Date | Size | Location | Purpose |
|---|---|---|---|---|
| 2.0.7.0 | 2020-02-11 | 9474872 | //penguin/assessments/mfcl/2020_01_17_devvsn12 | 2020 assessments |
| 2.1.0.0 | 2023-03-21 | 9715080 | //penguin/assessments/mfcl/2023-03-21_vsn2100 | 2023 assessments |
...
Shiny apps
R packages
- diags4MFCL has a
general
plot.comparisons, along with more specific functions:plot.biomass,plot.depletion,plot.F.temporal,plot.growth, andplot.selectivity.
Run times for the swo2017_refcase model run:
| Machine | Min |
|---|---|
| WSL_home | 17 |
| Condor | 22 |
| WSL_C_drive | 223 |
| WSL_D_drive | 133 |
Clearly, one should not run models on the C or D drives.
| Tool | Purpose | Feature | Improvement |
|---|---|---|---|
| MFCL | Fit model | Objective function | Consistent +/- sign of objfun, also in .par |
| FLR4MFCL | R-to-MFCL | MFCLLikelihood | Reads in negative objfun, reads in Age likelihood |
| " | Parameter correlation | read.MFCLCor, mat2MFCLCor, corFilter, corLabel | |
| " | Compare flags | diffFlags, diffFlagsStepwise, flagMeaning | |
| " | Find model results | finalPar, finalRep | |
| Shiny | Explore runs | Code reorganization | Easier to adapt to new stock, common trunk |
| " | Likelihood table | Includes CPUE and Age | |
| " | Official app collection | In one place, ofp-sam-shinyMFCL | |
| condor | R-to-Condor | Package on CRAN | User scripts become much shorter |
| " | Submit/list/download | Efficient and reliable Condor runs: stepwise and grid | |
| makeit | Automation | Package on CRAN | One R script runs other R scripts when needed |
| " | Run R scripts if needed | Efficient and reliable R jobs: all plots and tables | |
| Proper | Project mgmt | Standard dir structure | Allows us to develop and use shared tools across stocks |
| " | " | Guarantee that next assessor can find and reuse all components | |
| " | R script checks | Strengthens reproducibility of analyses |