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bioshake.cabal
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name: bioshake
version: 0.1.0.0
synopsis: Bioinformatics pipelines with shake
-- description:
license: ISC
license-file: LICENSE
author: Justin Bedo
maintainer: [email protected]
-- copyright:
-- category:
build-type: Simple
cabal-version: >=1.10
library
exposed-modules: Bioshake
, Bioshake.ADTEx
, Bioshake.BWA
, Bioshake.Bedtools
, Bioshake.CNVkit
, Bioshake.Cluster.ADTEx
, Bioshake.Cluster.BWA
, Bioshake.Cluster.Bedtools
, Bioshake.Cluster.CNVkit
, Bioshake.Cluster.Cutadapt
, Bioshake.Cluster.FREEC
, Bioshake.Cluster.Gridss
, Bioshake.Cluster.Kallisto
, Bioshake.Cluster.Hisat2
, Bioshake.Cluster.Octopus
, Bioshake.Cluster.Picard
, Bioshake.Cluster.Platypus
, Bioshake.Cluster.Samtools
, Bioshake.Cluster.Sequenza
, Bioshake.Cluster.SnpEff
, Bioshake.Cluster.SomaticSniper
, Bioshake.Cluster.Strelka
, Bioshake.Cluster.Torque
, Bioshake.Cluster.Varscan
, Bioshake.Cutadapt
, Bioshake.EDAM
, Bioshake.FREEC
, Bioshake.Facets
, Bioshake.Gridss
, Bioshake.Kallisto
, Bioshake.Hisat2
, Bioshake.Octopus
, Bioshake.Picard
, Bioshake.Platypus
, Bioshake.Samtools
, Bioshake.Sequenza
, Bioshake.SnpEff
, Bioshake.SomaticSniper
, Bioshake.Strelka
, Bioshake.TH
, Bioshake.Tags
, Bioshake.Types
, Bioshake.Varscan
other-modules: Bioshake.Internal.ADTEx
, Bioshake.Internal.BWA
, Bioshake.Internal.Bedtools
, Bioshake.Internal.CNVkit
, Bioshake.Internal.Cutadapt
, Bioshake.Internal.Hisat2
, Bioshake.Internal.FREEC
, Bioshake.Internal.Facets
, Bioshake.Internal.Gridss
, Bioshake.Internal.Kallisto
, Bioshake.Internal.Octopus
, Bioshake.Internal.Picard
, Bioshake.Internal.Platypus
, Bioshake.Internal.Samtools
, Bioshake.Internal.Sequenza
, Bioshake.Internal.SnpEff
, Bioshake.Internal.SomaticSniper
, Bioshake.Internal.Strelka
, Bioshake.Internal.Varscan
other-extensions: DataKinds
, DeriveFunctor
, FlexibleContexts
, FlexibleInstances
, GADTs
, KindSignatures
, MultiParamTypeClasses
, Rank2Types
, ScopedTypeVariables
, StandaloneDeriving
, TemplateHaskell
, TypeOperators
, TypeSynonymInstances
, UndecidableInstances
, ViewPatterns
build-depends: base >=4.9 && <4.12
, binary >=0.8 && <0.9
, bytestring >=0.10 && <0.11
, containers >=0.5 && <0.6
, cryptonite >= 0.25 && < 0.26
, directory >=1.2 && <1.4
, free >= 5.0 && < 5.2
, mtl >= 2.2.2 && < 2.3
, shake >= 0.16.4
, split >= 0.2.3 && < 0.3
, template-haskell >=2.11 && <2.14
, temporary >= 1.3 && < 1.4
, transformers >=0.5 && <0.6
, unix >=2.7 && <2.8
, reflection >= 2.1.4 && < 2.2
-- hs-source-dirs:
default-language: Haskell2010