diff --git a/docker/Dockerfile b/docker/Dockerfile index 36fed6f16..15f60d440 100644 --- a/docker/Dockerfile +++ b/docker/Dockerfile @@ -6,7 +6,7 @@ FROM ubuntu:16.04 LABEL base.image="biocontainers:latest" LABEL version="1" LABEL software="GRIDSS" -LABEL software.version="2.0.0" +LABEL software.version="2.0.1" LABEL about.summary="Genomic Rearrangement IDentification Software Suite" LABEL about.home="https://github.com/PapenfussLab/gridss" LABEL about.tags="Genomics" @@ -32,6 +32,6 @@ RUN chmod 777 /data USER gridss RUN mkdir /data/gridss WORKDIR /data/gridss -RUN wget https://github.com/PapenfussLab/gridss/releases/download/v2.0.0/gridss-2.0.0-gridss-jar-with-dependencies.jar +RUN wget https://github.com/PapenfussLab/gridss/releases/download/v2.0.1/gridss-2.0.1-gridss-jar-with-dependencies.jar -ENTRYPOINT ["java", "-ea", "-Xmx16g", "-Dsamjdk.create_index=true", "-Dsamjdk.use_async_io_read_samtools=true", "-Dsamjdk.use_async_io_write_samtools=true", "-Dsamjdk.use_async_io_write_tribble=true", "-Dgridss.gridss.output_to_temp_file=true", "-cp", "/data/gridss/gridss-2.0.0-gridss-jar-with-dependencies.jar", "gridss.CallVariants", "WORKER_THREADS=4"] +ENTRYPOINT ["java", "-ea", "-Xmx16g", "-Dsamjdk.create_index=true", "-Dsamjdk.use_async_io_read_samtools=true", "-Dsamjdk.use_async_io_write_samtools=true", "-Dsamjdk.use_async_io_write_tribble=true", "-Dgridss.gridss.output_to_temp_file=true", "-cp", "/data/gridss/gridss-2.0.1-gridss-jar-with-dependencies.jar", "gridss.CallVariants", "WORKER_THREADS=4"] diff --git a/scripts/publish_docker.sh b/scripts/publish_docker.sh new file mode 100644 index 000000000..521dc2f5b --- /dev/null +++ b/scripts/publish_docker.sh @@ -0,0 +1,7 @@ +# Publishes the GRIDSS docker +version=2.0.1 +cd ../docker +docker build --tag gridss/gridss:$version . +docker build --tag gridss/gridss:latest . +docker push gridss/gridss:latest +docker push gridss/gridss:$version \ No newline at end of file