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Complex & Famplex Component #1222

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jvwong opened this issue Nov 8, 2023 · 0 comments
Open

Complex & Famplex Component #1222

jvwong opened this issue Nov 8, 2023 · 0 comments

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@jvwong
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jvwong commented Nov 8, 2023 •
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We introduced support for Famplex complexes (#1181) which are a distinct Biofactoid entity type (namedComplex), appear as single nodes in the curation tool/Explorer, and importantly, are represented in BioPAX as type bp:complex with no components.

In Biofactoid, a consequence of these decisions in Biofactoid is that Famplex namedComplex entities can be included as components of complexes. Though it is conceivable that an author desire to include a namedComplex as a component of a complex, nested complexes are disallowed in BioPAX.

Example doc with AP1 complex as component:

fplxComplex_as_component
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