DESCRIPTION

Package: rseqR
Type: Package
Title: RNA-seq data processing pipeline
Version: 0.0.1.1
Authors@R: c(person("Anil", "Chalisey", , "anilchalisey@gmail.com", role = c("aut", "cre")))
Maintainer: Anil Chalisey <anilchalisey@gmail.com>
Description: An R-based pipeline to analyse RNA-seq data. This pipeline performs
  quality control of reads, generates gene and transcript level counts, performs 
  differential analysis, and gene pathway enrichment analyses.
Depends: R (>= 3.4.0)
SystemRequirements: Salmon, FastQC, MultiQC, fastp
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
biocViews: 
Imports: utils,
    parallel,
    data.table,
    dplyr,
    tximport,
    purrr,
    edgeR,
    limma,
    stats,
    grDevices,
    ggplot2,
    ggrepel,
    doParallel,
    DESeq2,
    SummarizedExperiment,
    magrittr,
    ggdendro,
    viridis,
    grid,
    gridExtra,
    gtable,
    tools,
    crayon,
    UpSetR,
    gage,
    org.Hs.eg.db,
    org.Mm.eg.db,
    foreach,
    GO.db,
    matrixStats,
    RColorBrewer,
    reshape2,
    lubridate,
    rjson
Suggests: data.tree
URL: https://github.com/anilchalisey/rseqR, https://anilchalisey.github.io/rseqR/
BugReports: https://github.com/anilchalisey/rseqR/issues