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Fasta manipulation scripts

Requirements

Python 3.8 is required to run the scripts

Please run the below:

python -m pip install -r requirements.txt

Instructions

Run the below in order to get more information about a script

 ./repacle_header.py --help
 ./replace_n.py --help

Usage

replace_header.py will replace the header in a .fa file based on the file name and the selected delimiter and range, it will also change any Xs to Ns inside the file

replace_n.py will repace all occurances of two or more Ns in a .fasta file with a new header or a 10 000 Ns based on the user input

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