You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I didn't entirely nail down how this happens but when using the del_meta options .json sidercars can get mismatched when writing them back to the original bids directory.
In my case my bold json's were confused with sbref jsons, sbref jsons with physio ones etc.
Sorry I don't have more time to write a more detailed report but just wanted to flag this in case others have come across too. If defacing after preprocessing this could be easy to miss because the dataset would still pass validator but no bids app's would rely on info in sidecars anymore (e.g. fmriprep).
The text was updated successfully, but these errors were encountered:
Hi,
I didn't entirely nail down how this happens but when using the
del_meta
options .json sidercars can get mismatched when writing them back to the original bids directory.In my case my bold json's were confused with sbref jsons, sbref jsons with physio ones etc.
It might be because when the file names are 'zip' ped together some files aren't correctly aligned.
https://github.com/PeerHerholz/BIDSonym/blob/master/bidsonym/utils.py#L199
Sorry I don't have more time to write a more detailed report but just wanted to flag this in case others have come across too. If defacing after preprocessing this could be easy to miss because the dataset would still pass validator but no bids app's would rely on info in sidecars anymore (e.g.
fmriprep
).The text was updated successfully, but these errors were encountered: