diff --git a/CITATION.cff b/CITATION.cff index ea4c13ca..908a5574 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -103,5 +103,5 @@ keywords: - BIDS - Neuroimaging license: MIT -version: 1.0.2 -date-released: '2023-09-07' +version: 1.1.0 +date-released: '2024-04-02' diff --git a/HISTORY.rst b/HISTORY.rst index 03ec01d9..db648f65 100644 --- a/HISTORY.rst +++ b/HISTORY.rst @@ -2,6 +2,38 @@ History ======= +1.1.0 (2024-04-02) +------------------ + +🎉 Exciting New Features +```````````````````````` + +* Make CLI commands available as `cubids ` by @tsalo in https://github.com/PennLINC/CuBIDS/pull/268 +* Add ASL fields to config by @tsalo in https://github.com/PennLINC/CuBIDS/pull/282 + +🐛 Bug Fixes +```````````` + +* Remove `--ignore_subject_consistency` param from `cubids validate` by @tsalo in https://github.com/PennLINC/CuBIDS/pull/276 + +Other Changes +````````````` + +* Use black and isort to autoformat the main package by @tsalo in https://github.com/PennLINC/CuBIDS/pull/266 +* Reorganize packaging and hopefully fix tests by @tsalo in https://github.com/PennLINC/CuBIDS/pull/267 +* Move notebooks into example gallery by @tsalo in https://github.com/PennLINC/CuBIDS/pull/278 +* Drop jinja and wrapt from dependencies and pin other requirements by @tsalo in https://github.com/PennLINC/CuBIDS/pull/295 +* Run Pytests across all supported Python versions by @tsalo in https://github.com/PennLINC/CuBIDS/pull/279 +* Improve documentation by @tsalo in https://github.com/PennLINC/CuBIDS/pull/290 + +New Contributors +```````````````` + +* @tsalo made their first contribution in https://github.com/PennLINC/CuBIDS/pull/266 +* @dependabot made their first contribution in https://github.com/PennLINC/CuBIDS/pull/293 + +**Full Changelog**: https://github.com/PennLINC/CuBIDS/compare/1.0.2...1.0.3 + 1.0.2 (2023-09-07) ------------------ diff --git a/README.rst b/README.rst index 7fd6c6ec..2ebea2fa 100644 --- a/README.rst +++ b/README.rst @@ -4,14 +4,36 @@ CuBIDS: Curation of BIDS .. image:: https://img.shields.io/pypi/v/cubids.svg :target: https://pypi.python.org/pypi/cubids + :alt: Latest Version -.. image:: https://circleci.com/gh/PennLINC/CuBIDS.svg?style=svg - :target: https://circleci.com/gh/PennLINC/CuBIDS +.. image:: https://img.shields.io/badge/Source%20Code-pennlinc%2Fcubids-purple + :target: https://github.com/PennLINC/CuBIDS + :alt: GitHub Repository .. image:: https://readthedocs.org/projects/cubids/badge/?version=latest :target: https://cubids.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status +.. image:: https://circleci.com/gh/PennLINC/CuBIDS.svg?style=svg + :target: https://circleci.com/gh/PennLINC/CuBIDS + :alt: Test Status + +.. image:: https://codecov.io/gh/PennLINC/CuBIDS/branch/main/graph/badge.svg + :target: https://app.codecov.io/gh/PennLINC/CuBIDS/tree/main + :alt: Codecov + +.. image:: https://img.shields.io/badge/NeuroImage-10.1016%2Fj.neuroimage.2022.119609-purple + :target: https://doi.org/10.1016/j.neuroimage.2022.119609 + :alt: Publication DOI + +.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.6514881.svg + :target: https://doi.org/10.5281/zenodo.6514881 + :alt: Zenodo DOI + +.. image:: https://img.shields.io/badge/License-MIT-green + :target: https://opensource.org/licenses/MIT + :alt: License + About ----- @@ -35,3 +57,17 @@ in the process of preparing BIDS data for successful preprocessing and analysis For full documentation, please visit our `ReadTheDocs `_. + + +Citing CuBIDS +------------- + +If you use CuBIDS in your research, please cite the following paper: + + Covitz, S., Tapera, T. M., Adebimpe, A., Alexander-Bloch, A. F., Bertolero, M. A., Feczko, E., + ... & Satterthwaite, T. D. (2022). + Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. + NeuroImage, 263, 119609. + doi:10.1016/j.neuroimage.2022.119609. + +Please also cite the Zenodo DOI for the version you used.