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Can't tabulate dicom files on flywheel (gear or cli) #100

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AnthonyRes opened this issue Jun 15, 2022 · 0 comments
Open

Can't tabulate dicom files on flywheel (gear or cli) #100

AnthonyRes opened this issue Jun 15, 2022 · 0 comments

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@AnthonyRes
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AnthonyRes commented Jun 15, 2022

CONVERTABLE_TYPES = ("bvec", "bval", "nifti")

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I was trying to use fw-heudiconv-tabulate for a few of our projects to generate a seqinfo table, but the table being generated was empty. I believe it's because my files on flywheel are all dicoms. Line 78 checks if the file type of the acquisition is in CONVERTABLE_TYPES and skips the rest of the loop that would generate the table if it is not a convertable type, returning an empty array for acquisition_to_heudiconv(). Adding "dicom" to convertable types did generate the table.

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