From 1f9d246d51e9121e5bd56f1a465c04f21b3392c7 Mon Sep 17 00:00:00 2001 From: singlesp Date: Fri, 13 Dec 2024 16:36:22 -0500 Subject: [PATCH] download dicoms --- curation/download_dcms/download_dcms.sh | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 curation/download_dcms/download_dcms.sh diff --git a/curation/download_dcms/download_dcms.sh b/curation/download_dcms/download_dcms.sh new file mode 100644 index 0000000..1197917 --- /dev/null +++ b/curation/download_dcms/download_dcms.sh @@ -0,0 +1,11 @@ +#!/bin/bash +#SBATCH --nodes=1 +#SBATCH --ntasks=1 +#SBATCH --cpus-per-task=4 +#SBATCH --mem=16G +#SBATCH --time=48:00:00 +#SBATCH --output=/cbica/projects/grmpy/data/bids/code/download_dcms/logs/download_dcms-%A.out +#SBATCH --error=/cbica/projects/grmpy/data/bids/code/download_dcms/logs/download_dcms-%A.err + +unset LD_LIBRARY_PATH +/cbica/projects/grmpy/glibc-2.34/lib/ld-linux-x86-64.so.2 /cbica/projects/grmpy/linux_amd64/fw sync -m --include dicom fw://bbl/GRMPY_822831 /cbica/projects/grmpy/data/bids/sourcedata/