BIDS filter doesnt work as expected for qsiprep pipeline

[bilas003]

Summary

BIDS filter doesnt work as expected for qsiprep pipeline

Additional details

• QSIPrep version:0.20.1.dev0+geda84d5.d2024011
• Singularity version: qsiprep_0.20.0.sif

What were you trying to do?

I have a bids filter designed to filter out the desired scans in the qsiprep pipeline

What did you expect to happen?

The output should only contain the files mentioned in the BIDS filter

What actually happened?

Contains files other than mentioned in the filter

Reproducing the bug

To test if the filter is correct, I ran the filter in PYbids and the output is as expected but fails while incorporated with qsiprep pipeline.

[smeisler]

Hi @bilas003,

May you please see if the error persists with the most recent version (pennlinc dockerhub, 1.0.0rc1)?