From 4f75cf66beb1e3d6958b36cd0e63610c1a685cd9 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Wed, 9 Oct 2024 17:09:41 -0400 Subject: [PATCH] Add MNIInfant to template enum. --- qsiprep/interfaces/anatomical.py | 1 - qsiprep/interfaces/reports.py | 2 +- qsiprep/workflows/anatomical/surface.py | 5 ----- 3 files changed, 1 insertion(+), 7 deletions(-) diff --git a/qsiprep/interfaces/anatomical.py b/qsiprep/interfaces/anatomical.py index 5c24b8ea..1eb5702f 100644 --- a/qsiprep/interfaces/anatomical.py +++ b/qsiprep/interfaces/anatomical.py @@ -29,7 +29,6 @@ from scipy.spatial import distance LOGGER = logging.getLogger("nipype.interface") -KNOWN_TEMPLATES = ["MNI152NLin2009cAsym", "infant"] class _DiceOverlapInputSpec(BaseInterfaceInputSpec): diff --git a/qsiprep/interfaces/reports.py b/qsiprep/interfaces/reports.py index 67230ea7..159353c1 100644 --- a/qsiprep/interfaces/reports.py +++ b/qsiprep/interfaces/reports.py @@ -137,7 +137,7 @@ class SubjectSummaryInputSpec(BaseInterfaceInputSpec): subject_id = Str(desc="Subject ID") dwi_groupings = traits.Dict(desc="groupings of DWI files and their output names") output_spaces = traits.List(desc="Target spaces") - template = traits.Enum("MNI152NLin2009cAsym", desc="Template space") + template = traits.Enum("MNI152NLin2009cAsym", "MNIInfant", desc="Template space") class SubjectSummaryOutputSpec(SummaryOutputSpec): diff --git a/qsiprep/workflows/anatomical/surface.py b/qsiprep/workflows/anatomical/surface.py index 79bacb6f..2352ae36 100644 --- a/qsiprep/workflows/anatomical/surface.py +++ b/qsiprep/workflows/anatomical/surface.py @@ -36,11 +36,6 @@ LOGGER = logging.getLogger("nipype.workflow") -TEMPLATE_MAP = { - "MNI152NLin2009cAsym": "mni_icbm152_nlin_asym_09c", -} - - def init_surface_recon_wf(omp_nthreads, hires, name="surface_recon_wf"): r""" This workflow reconstructs anatomical surfaces using FreeSurfer's ``recon-all``.