Skip to content

trigger

trigger #17

Workflow file for this run

name: Liat Workflow
on:
push:
branches:
- liats/wip/ci_cd
permissions:
id-token: write
contents: read
jobs:
create-conda-env:
runs-on: ubuntu-latest
container:
image: amazonlinux:2
steps:
- name: Show OS version
run: cat /etc/os-release
- name: Check user
run: |
whoami
echo "HOME: $HOME"
echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE"
echo "PATH: $PATH"
export PATH=$GITHUB_WORKSPACE:$PATH
echo "PATH: $PATH"
# - name: Checkout Code
# uses: actions/checkout@v2 # Checks out the repository under $GITHUB_WORKSPACE.
- name: Show workspace
run: echo $GITHUB_WORKSPACE
- name: Install conda
run: |
curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda
echo "export PATH=$HOME/miniconda/bin:$PATH" >> $HOME/.bashrc
source $HOME/.bashrc
conda init bash
conda config --set always_yes yes --set changeps1 no
conda update -q conda
conda info -a
- name: Create conda environment
run : |
conda create -n test-env python=3.10
conda activate test-env
conda install pheno-utils
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: arn:aws:iam::081569964966:role/github_cicd
aws-region: eu-west-1
# Check the account role and region
- name: Check AWS Account
run: aws sts get-caller-identity
# - name: Create and Upload Artifact to S3
# run: |
# # Example of creating a tar.gz archive and uploading it
# tar -czvf artifact.tar.gz /path/to/your/files
# aws s3 cp artifact.tar.gz s3://YOUR_S3_BUCKET_NAME/path/to/upload/
- name: Cleanup - Terminate EC2 Instance
if: always()
run: |
echo "cleanup"