diff --git a/.github/workflows/liat.yml b/.github/workflows/liat.yml index 88ed9a0..59f2465 100644 --- a/.github/workflows/liat.yml +++ b/.github/workflows/liat.yml @@ -28,6 +28,26 @@ jobs: - name: Checkout Code uses: actions/checkout@v2 # Checks out the repository under $GITHUB_WORKSPACE. + + - name: Show workspace + run: echo $GITHUB_WORKSPACE + + - name: Install conda + run: | + curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh + bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda + echo "export PATH=$HOME/miniconda/bin:$PATH" >> $HOME/.bashrc + source $HOME/.bashrc + conda init bash + conda config --set always_yes yes --set changeps1 no + conda update -q conda + conda info -a + + - name: Create conda environment + run : | + conda create -n test-env python=3.10 + conda activate test-env + conda install pheno-utils - name: Configure AWS Credentials uses: aws-actions/configure-aws-credentials@v4