From 7472df6363bafa426860f995d3381c9e2a8f4ecf Mon Sep 17 00:00:00 2001 From: Liat Schulzinger Date: Tue, 13 Feb 2024 16:22:32 +0200 Subject: [PATCH] trigger --- .github/workflows/liat.yml | 21 ++++++++------------- 1 file changed, 8 insertions(+), 13 deletions(-) diff --git a/.github/workflows/liat.yml b/.github/workflows/liat.yml index ed2462c..c161bfc 100644 --- a/.github/workflows/liat.yml +++ b/.github/workflows/liat.yml @@ -20,30 +20,25 @@ jobs: run: yum install -y tar gzip - name: Checkout Code - uses: actions/checkout@v3.6.0 # Checks out the repository under $GITHUB_WORKSPACE. + uses: actions/checkout@v3 # Checks out the repository under $GITHUB_WORKSPACE. - name: Install conda continue-on-error: true run: | curl -sS -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh - bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda - export PATH=$HOME/miniconda/bin:$PATH - conda init bash > /dev/null - conda update -q conda - conda info -a + bash Miniconda3-latest-Linux-x86_64.sh -b -u -p $HOME/miniconda - name: Create conda environment - continue-on-error: true run : | export PATH=$HOME/miniconda/bin:$PATH - conda init bash > /dev/null - conda create -q -n test-env python=3.10 > /dev/null - conda init bash > /dev/null - conda activate test-env - conda install pheno-utils + conda init bash + # conda create -q -n test-env python=3.10 > /dev/null + # conda init bash > /dev/null + # conda activate test-env + # conda install pheno-utils - name: Configure AWS Credentials - uses: aws-actions/configure-aws-credentials@v3.0.2 + uses: aws-actions/configure-aws-credentials@v3 with: role-to-assume: arn:aws:iam::081569964966:role/github_cicd aws-region: eu-west-1