clean up some ssh stuff

workspace/scripts/01-make-pioreactor-user.sh

@@ -11,6 +11,7 @@ install_cleanup_trap
 
 USERNAME=pioreactor
 PASS=raspberry
+SSH_DIR=/home/$USERNAME/.ssh
 
 adduser --gecos "" --disabled-password $USERNAME
 chpasswd <<<"$USERNAME:$PASS"
@@ -41,4 +42,11 @@ chmod 755 /home/$USERNAME
 
 # change default password for the pi user, as per RPi Foundations recommendation. Not sure if this works...
 chpasswd <<<"pi:notaraspberry"
-rm /etc/ssh/sshd_config.d/rename_user.conf
+rm /etc/ssh/sshd_config.d/rename_user.conf
+
+##### set some SSH stuff, populated on firstboot.
+sudo -u $USERNAME rm -rf $SSH_DIR # remove if already exists.
+
+sudo -u $USERNAME mkdir -p $SSH_DIR
+sudo cp /files/ssh_config $SSH_DIR/config
+sudo chown pioreactor:pioreactor $SSH_DIR/config

workspace/scripts/02-install-python-and-pip.sh

@@ -11,19 +11,18 @@ install_cleanup_trap
 
 
 USERNAME=pioreactor
-SSH_DIR=/home/$USERNAME/.ssh
 
 
 apt-get install -y python3-pip
 apt-get install -y python3-dev # needed to build CLoader in pyyaml
 sudo rm -rf /usr/lib/python3.11/EXTERNALLY-MANAGED || true # see jeff gerlings blog post
 sudo pip3 install pip -U # update to latest
+
+# these live in /root/.config/pip/pip.conf
 sudo pip3 config set global.disable-pip-version-check true # don't check for latest pip
 sudo pip3 config set global.root-user-action "ignore"
+sudo pip3 config set global.extra-index-url 'https://www.piwheels.org/simple'
 
 
-sudo -u $USERNAME rm -rf $SSH_DIR # remove if already exists.
 
-sudo -u $USERNAME mkdir -p $SSH_DIR
-sudo cp /files/ssh_config $SSH_DIR/config
 

workspace/scripts/files/bash/update_ui.sh

@@ -38,3 +38,10 @@ rm -rf $UI_FOLDER
 mkdir $UI_FOLDER
 cp -rp $WORK_DIR/. $UI_FOLDER
 chgrp -R www-data $UI_FOLDER
+
+ENV=$UI_FOLDER/.env
+if [ -f "$ENV" ]; then
+    echo "$FILE exists."
+else
+    mv $UI_FOLDER/.env.example ENV
+fi

workspace/scripts/files/config.example.ini

@@ -124,6 +124,7 @@ pause_between_subdoses_seconds=5
 waste_removal_multiplier=2
 max_volume_to_warn=17.0
 max_volume_to_stop=18.0
+max_subdose=0.75
 
 
 [dosing_automation.pid_morbidostat]
@@ -155,7 +156,6 @@ rate_std=0.20
 ekf_variance_shift_post_dosing_minutes=0.40
 ekf_variance_shift_post_dosing_factor=2500
 
-
 [data_sharing_with_pioreactor]
 # This enables sending error logs back to us developers at Pioreactor.
 # (switch to 1 to enable sending, 0 to disable any sending)