From 9cf5803724fe1578dba6ae09581f39393d36368f Mon Sep 17 00:00:00 2001 From: bellerbrock Date: Mon, 22 Oct 2018 19:42:22 +0000 Subject: [PATCH 1/2] Clarify weight of vines terms --- sweetpotato_trait.obo | 62 +++++++++++++++++++------------------------ 1 file changed, 27 insertions(+), 35 deletions(-) diff --git a/sweetpotato_trait.obo b/sweetpotato_trait.obo index 2771123..7df54b6 100644 --- a/sweetpotato_trait.obo +++ b/sweetpotato_trait.obo @@ -3,6 +3,7 @@ date: 12:02:2018 19:35 saved-by: vagrant auto-generated-by: OBO-Edit 2.3.1 default-namespace: SweetpotatoDefault +ontology: TEMP [Term] id: CO_331:0000000 @@ -2163,15 +2164,15 @@ created_by: W. Grueneberg [Term] id: CO_331:0000227 -name: Weight of vines measuring kg per plot +name: Weight of fresh vines measuring kg per plot namespace: SweetpotatoTrait def: "Weight of vines" [] -synonym: "VnW_Ms_kgplot" EXACT [] +synonym: "VnWt_F_kgplot" EXACT [] synonym: "VW" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000224 ! weight of vines relationship: variable_of CO_331:0000893 ! kg/plot -relationship: variable_of CO_331:0000894 ! measurements of vine mass +relationship: variable_of CO_331:0000894 ! measurement of fresh vine weight [Term] id: CO_331:0000230 @@ -2272,47 +2273,38 @@ relationship: variable_of CO_331:0000244 ! Dry weight of storage root relationship: variable_of CO_331:0000905 ! g relationship: variable_of CO_331:0000906 ! measurements of dry root mass -[Term] -id: CO_331:0000248 -name: Fresh weight of vines -namespace: SweetpotatoTrait -def: "Weight of vines samples" [] -synonym: "VnFWt" EXACT [] -is_a: CO_331:1000007 ! Quality_trait -created_by: W. Grueneberg - [Term] id: CO_331:0000251 -name: Fresh weight of vines measuring g of sample +name: weight of vine sample measuring g of fresh sample namespace: SweetpotatoTrait -def: "Weight of vines samples" [] +def: "Fresh weight of vine sample in grams" [] synonym: "DMFV" EXACT [] -synonym: "VnFWt_Et_g" EXACT [] +synonym: "VnSmpWt_F_g" EXACT [] is_a: CO_331:1000003 ! Variables -relationship: variable_of CO_331:0000248 ! Fresh weight of vines +relationship: variable_of CO_331:0000252 ! weight of vine sample relationship: variable_of CO_331:0000905 ! g -relationship: variable_of CO_331:0000907 ! measurements of fresh vine mass +relationship: variable_of CO_331:0000907 ! measurement of vine sample fresh weight [Term] id: CO_331:0000252 -name: Dry weight of vines +name: weight of vine sample namespace: SweetpotatoTrait -def: "Weight of vines samples" [] -synonym: "VnDWt" EXACT [] +def: "Weight of vine sample" [] +synonym: "VnSmpWt" EXACT [] is_a: CO_331:1000007 ! Quality_trait created_by: W. Grueneberg [Term] id: CO_331:0000255 -name: Dry weight of vines measuring g of sample +name: weight of vine sample measuring g of dry sample namespace: SweetpotatoTrait -def: "Weight of vines samples" [] +def: "Dry weight of vine sample measured in grams" [] synonym: "DMDV" EXACT [] -synonym: "VnDWt_Ms_g" EXACT [] +synonym: "VnSmpWt_D_g" EXACT [] is_a: CO_331:1000003 ! Variables -relationship: variable_of CO_331:0000252 ! Dry weight of vines +relationship: variable_of CO_331:0000252 ! weight of vine sample relationship: variable_of CO_331:0000905 ! g -relationship: variable_of CO_331:0000908 ! measurements of dry vine mass +relationship: variable_of CO_331:0000908 ! measurement of vine sample dry weight [Term] id: CO_331:0000256 @@ -6155,14 +6147,14 @@ name: kg/plot namespace: SweetpotatoScale is_a: CO_331:1000019 ! Numerical relationship: scale_of CO_331:0000892 ! measurements of root mass -relationship: scale_of CO_331:0000894 ! measurements of vine mass +relationship: scale_of CO_331:0000894 ! measurement of fresh vine weight relationship: scale_of CO_331:0000895 ! estimated weight per plot - method [Term] id: CO_331:0000894 -name: measurements of vine mass +name: measurement of fresh vine weight namespace: SweetpotatoMethod -def: "Measured using scales" [] +def: "Fresh vine weight measured using a scale" [] is_a: CO_331:1000011 ! Measurement relationship: method_of CO_331:0000224 ! weight of vines @@ -6265,8 +6257,8 @@ namespace: SweetpotatoScale is_a: CO_331:1000019 ! Numerical relationship: scale_of CO_331:0000904 ! measurements of fresh root mass relationship: scale_of CO_331:0000906 ! measurements of dry root mass -relationship: scale_of CO_331:0000907 ! measurements of fresh vine mass -relationship: scale_of CO_331:0000908 ! measurements of dry vine mass +relationship: scale_of CO_331:0000907 ! measurement of vine sample fresh weight +relationship: scale_of CO_331:0000908 ! measurement of vine sample dry weight [Term] id: CO_331:0000906 @@ -6278,19 +6270,18 @@ relationship: method_of CO_331:0000244 ! Dry weight of storage root [Term] id: CO_331:0000907 -name: measurements of fresh vine mass +name: measurement of vine sample fresh weight namespace: SweetpotatoMethod -def: "Fresh weight of vines" [] +def: "Fresh weight of vine sample" [] is_a: CO_331:1000011 ! Measurement -relationship: method_of CO_331:0000248 ! Fresh weight of vines [Term] id: CO_331:0000908 -name: measurements of dry vine mass +name: measurement of vine sample dry weight namespace: SweetpotatoMethod def: "Dry weight of vines" [] is_a: CO_331:1000011 ! Measurement -relationship: method_of CO_331:0000252 ! Dry weight of vines +relationship: method_of CO_331:0000252 ! weight of vine sample [Term] id: CO_331:0000909 @@ -7314,3 +7305,4 @@ name: scale_of [Typedef] id: variable_of name: variable_of + From 6115c9cae023c2661609ff1f3c00a9b8afcabbab Mon Sep 17 00:00:00 2001 From: bellerbrock Date: Mon, 22 Oct 2018 20:01:06 +0000 Subject: [PATCH 2/2] Clarify root weight terms --- sweetpotato_trait.obo | 74 +++++++++++++++++++------------------------ 1 file changed, 32 insertions(+), 42 deletions(-) diff --git a/sweetpotato_trait.obo b/sweetpotato_trait.obo index 7df54b6..b5261b8 100644 --- a/sweetpotato_trait.obo +++ b/sweetpotato_trait.obo @@ -2129,7 +2129,7 @@ synonym: "CRW" EXACT [] synonym: "RtCmW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000218 ! weight of commercial storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -2150,7 +2150,7 @@ synonym: "NCRW" EXACT [] synonym: "RtNCmW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000221 ! weight of non-commercial storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -2231,47 +2231,38 @@ relationship: variable_of CO_331:0000097 ! storage root cracking relationship: variable_of CO_331:0000902 ! estimation of cracking roots relationship: variable_of CO_331:0000903 ! rtscr 4 pt. scale -[Term] -id: CO_331:0000240 -name: Fresh weight of storage root -namespace: SweetpotatoTrait -def: "Fresh weight of storage root samples" [] -synonym: "RtFWt" EXACT [] -is_a: CO_331:1000007 ! Quality_trait -created_by: W. Grueneberg - [Term] id: CO_331:0000243 -name: Fresh weight of storage root samples measuring g of sample +name: weight of storage root sample measuring g of fresh sample namespace: SweetpotatoTrait -def: "Fresh weight of storage root samples" [] +def: "Fresh weight of storage root sample" [] synonym: "DMF" EXACT [] -synonym: "RtFWt_Ms_g" EXACT [] +synonym: "RtSmpWt_F_g" EXACT [] is_a: CO_331:1000003 ! Variables -relationship: variable_of CO_331:0000240 ! Fresh weight of storage root -relationship: variable_of CO_331:0000904 ! measurements of fresh root mass +relationship: variable_of CO_331:0000244 ! Weight of storage root sample +relationship: variable_of CO_331:0000904 ! measurement of storage root sample fresh weight relationship: variable_of CO_331:0000905 ! g [Term] id: CO_331:0000244 -name: Dry weight of storage root +name: Weight of storage root sample namespace: SweetpotatoTrait -def: "Dry weight of storage root samples" [] -synonym: "RtDWt" EXACT [] +def: "Weight of storage root sample" [] +synonym: "RtSmpWt" EXACT [] is_a: CO_331:1000007 ! Quality_trait created_by: W. Grueneberg [Term] id: CO_331:0000247 -name: Dry weight of storage root samples measuring g of sample +name: weight of storage root sample measuring g of dry sample namespace: SweetpotatoTrait -def: "Dry weight of storage root samples" [] +def: "Dry weight of storage root sample" [] synonym: "DMD" EXACT [] -synonym: "RtDWt_Ms_g" EXACT [] +synonym: "RtSmpWt_D_g" EXACT [] is_a: CO_331:1000003 ! Variables -relationship: variable_of CO_331:0000244 ! Dry weight of storage root +relationship: variable_of CO_331:0000244 ! Weight of storage root sample relationship: variable_of CO_331:0000905 ! g -relationship: variable_of CO_331:0000906 ! measurements of dry root mass +relationship: variable_of CO_331:0000906 ! measurement of storage root sample dry weight [Term] id: CO_331:0000251 @@ -3859,7 +3850,7 @@ synonym: "RtUS1W_Ms_kgplot" EXACT [] synonym: "US1" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000601 ! weight of total US no. 1 storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3871,7 +3862,7 @@ synonym: "CAN" EXACT [] synonym: "RtCanW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000602 ! weight of canner storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3883,7 +3874,7 @@ synonym: "JUM" EXACT [] synonym: "RtJumW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000603 ! weight of jumbo storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3895,7 +3886,7 @@ synonym: "CUL" EXACT [] synonym: "RtCulW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000604 ! weight of cull storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3907,7 +3898,7 @@ synonym: "90CT" EXACT [] synonym: "Rt90ctW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000605 ! weight of 90 count US no. 1 storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3919,7 +3910,7 @@ synonym: "55CT" EXACT [] synonym: "Rt55ctW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000606 ! weight of 55 count US no. 1 storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3931,7 +3922,7 @@ synonym: "40CT" EXACT [] synonym: "Rt40ctW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000607 ! weight of 40 count US no. 1 storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -3943,7 +3934,7 @@ synonym: "32CT" EXACT [] synonym: "Rt32ctW_Ms_kgplot" EXACT [] is_a: CO_331:1000003 ! Variables relationship: variable_of CO_331:0000608 ! weight of 32 count US no. 1 storage roots -relationship: variable_of CO_331:0000892 ! measurements of root mass +relationship: variable_of CO_331:0000892 ! measurement of fresh storage root weight relationship: variable_of CO_331:0000893 ! kg/plot [Term] @@ -6134,7 +6125,7 @@ relationship: scale_of CO_331:0000890 ! estimated number per plant - method [Term] id: CO_331:0000892 -name: measurements of root mass +name: measurement of fresh storage root weight namespace: SweetpotatoMethod def: "Measured using scales" [] is_a: CO_331:1000011 ! Measurement @@ -6146,7 +6137,7 @@ id: CO_331:0000893 name: kg/plot namespace: SweetpotatoScale is_a: CO_331:1000019 ! Numerical -relationship: scale_of CO_331:0000892 ! measurements of root mass +relationship: scale_of CO_331:0000892 ! measurement of fresh storage root weight relationship: scale_of CO_331:0000894 ! measurement of fresh vine weight relationship: scale_of CO_331:0000895 ! estimated weight per plot - method @@ -6244,29 +6235,28 @@ relationship: scale_of CO_331:0000902 ! estimation of cracking roots [Term] id: CO_331:0000904 -name: measurements of fresh root mass +name: measurement of storage root sample fresh weight namespace: SweetpotatoMethod -def: "Fresh weight of storage root samples (roughly 200g recommended sample size)" [] +def: "Fresh weight of storage root sample (roughly 200g recommended sample size)" [] is_a: CO_331:1000011 ! Measurement -relationship: method_of CO_331:0000240 ! Fresh weight of storage root [Term] id: CO_331:0000905 name: g namespace: SweetpotatoScale is_a: CO_331:1000019 ! Numerical -relationship: scale_of CO_331:0000904 ! measurements of fresh root mass -relationship: scale_of CO_331:0000906 ! measurements of dry root mass +relationship: scale_of CO_331:0000904 ! measurement of storage root sample fresh weight +relationship: scale_of CO_331:0000906 ! measurement of storage root sample dry weight relationship: scale_of CO_331:0000907 ! measurement of vine sample fresh weight relationship: scale_of CO_331:0000908 ! measurement of vine sample dry weight [Term] id: CO_331:0000906 -name: measurements of dry root mass +name: measurement of storage root sample dry weight namespace: SweetpotatoMethod -def: "Dry weight of storage root samples" [] +def: "Dry weight of storage root sample" [] is_a: CO_331:1000011 ! Measurement -relationship: method_of CO_331:0000244 ! Dry weight of storage root +relationship: method_of CO_331:0000244 ! Weight of storage root sample [Term] id: CO_331:0000907