DESCRIPTION

Package: highlineR
Title: A Novel Visualization Tool to Assess Diversity in NGS Data
Version: 0.1
Authors@R: c(person("Lisa-Monique", "Edward", email = "lisam.edward@gmail.com", role = c("aut")),
    person("Art", "Poon", email = "apoon42@uwo.ca", role = "cre"))
Description: A novel visualization tool to assess diversity in NGS data. Similar to the Los 
    Alamos Highlighter tool, highlineR highlights mismatches, transition and 
    transversion mutations, and synonymous and non-synonymous mutations in aligned 
    protein or nucleotide sequences. This tool also visualizes the relative 
    frequency of sequence variants and is particularly useful for visualizing 
    sequence diversity, potential recombination and super-infection.
Depends: R (>= 3.5)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: 
    ggplot2 (>= 3.1.1),
    ggpubr (>= 0.2),
    utils
Suggests: 
    ape (>= 5.3),
    parallel (>= 3.5.1),
    knitr,
    rmarkdown,
    testthat (>= 2.0.1),
BugReports: https://github.com/poonlab/highlineR/issues
RoxygenNote: 6.1.1
VignetteBuilder: knitr