Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NTR: organism count #86

Closed
ramonawalls opened this issue Jul 22, 2020 · 4 comments
Closed

NTR: organism count #86

ramonawalls opened this issue Jul 22, 2020 · 4 comments
Assignees

Comments

@ramonawalls
Copy link
Contributor

For new term requests, please provide the following information:

Preferred term label

organism count

Synonyms

organismal count

Textual definition

A count that inheres in an organism or collection of organisms of the same taxon.

Suggested parent term

Please look in the hierarchy in a browser such as [OLS](http://www.ebi.ac.uk/ols/ontologies/pco]

Attribution

https://orcid.org/0000-0001-8815-0078

NOTE:
Also make a subclass for organism count by taxon, in which all organisms counted are of the same taxon.

@kaiiam
Copy link

kaiiam commented Jul 23, 2020

xref UA-SRC-data/srpdio#3

@ramonawalls
Copy link
Contributor Author

@kaiiam

The problem with the proposed definition is that often the count is zero, which then can't inhere in an organism. We had this same challenge in the PPO, which we solved by defining plant structure presense as "A 'plant phenological trait' that is measured by the number of some 'plant structure' that are part of a 'whole plant'."

I propose a similar definition for organism count (syn: organism amount): An amount that is measured by the number of organisms of the same taxon.

To define this more clearly, I think we should create a subclass of BCO:observing process that is organism counting process. In fact, I think this class should be in BCO, not PCO. I will move the ticket there.

@ramonawalls
Copy link
Contributor Author

Looks like I can't transfer between orgs. Will close this one and open a new one in BCO.

@kaiiam
Copy link

kaiiam commented Aug 7, 2020

xref BiodiversityOntologies/bco#115

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants