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NEWS
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NEWS
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CHANGES IN VERSION 1.30
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NEW FEATURES
o now has HOCOMOCO version 11, with all motifs classified, and queryable,
by category ("core", "secondary") and reliability (A, B, C, D).
CHANGES IN VERSION 1.24
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NEW FEATURES
o query method now flexible, with "andStrings", "orStrings", "notStrings" parameters
The previous usage style is still supported. See man page.
o associateTranscriptionFactors (with motifs) substantially faster
CHANGES IN VERSION 1.20
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NEW FEATURES
o Now 13 sources, 52 organisms and 8369 motifs
o New sources: HOCOMOCOv10, HOMER, jaspar2016, SwissRegulon
o New methods: motifToGene, geneToMotif, associateTranscriptionFactors
SIGNIFICANT USER-VISIBLE CHANGES
o The new methods mentioned above provide both strict and permissive
mapping from motifs to their cognate transcription factors, thus
supporting reproducible regulatory network construction.
CHANGES IN VERSION 1.5.9
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NEW FEATURES
o JASPAR_2014 added, with 592 motifs
CHANGES IN VERSION 1.1.3
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NEW FEATURES
o 683 new motifs derived from DGF (digital genome footprinting)
from the stamlab (http://www.stamlab.org/) added. Each is
identified as either 'knownMotif' or 'novelMotif'