PyEC4PyHT.py

# -Begin-preamble-------------------------------------------------------
#
#                           CERN
#
#     European Organization for Nuclear Research
#
#
#     This file is part of the code:
#
#                   PyECLOUD Version 8.7.0
#
#
#     Main author:          Giovanni IADAROLA
#                           BE-ABP Group
#                           CERN
#                           CH-1211 GENEVA 23
#                           SWITZERLAND
#                           giovanni.iadarola@cern.ch
#
#     Contributors:         Eleonora Belli
#                           Philipp Dijkstal
#                           Lorenzo Giacomel
#                           Lotta Mether
#                           Annalisa Romano
#                           Giovanni Rumolo
#                           Eric Wulff
#
#
#     Copyright  CERN,  Geneva  2011  -  Copyright  and  any   other
#     appropriate  legal  protection  of  this  computer program and
#     associated documentation reserved  in  all  countries  of  the
#     world.
#
#     Organizations collaborating with CERN may receive this program
#     and documentation freely and without charge.
#
#     CERN undertakes no obligation  for  the  maintenance  of  this
#     program,  nor responsibility for its correctness,  and accepts
#     no liability whatsoever resulting from its use.
#
#     Program  and documentation are provided solely for the use  of
#     the organization to which they are distributed.
#
#     This program  may  not  be  copied  or  otherwise  distributed
#     without  permission. This message must be retained on this and
#     any other authorized copies.
#
#     The material cannot be sold. CERN should be  given  credit  in
#     all references.
#
# -End-preamble---------------------------------------------------------

import os
import subprocess
import time

import numpy as np
from scipy.constants import c

from . import myloadmat_to_obj as mlm
from . import buildup_simulation as bsim


class Empty(object):
    pass


class DummyBeamTim(object):
    """Dummy beam-timing class to interface with buildup simulation"""

    def __init__(self, PyPIC_state):
        self.PyPIC_state = PyPIC_state

        self.b_spac = 0.0
        self.pass_numb = 0
        self.N_pass_tot = 1

    def get_beam_eletric_field(self, MP_e):
        if MP_e.N_mp > 0:
            if self.PyPIC_state is None:
                Ex_n_beam = 0.0 * MP_e.x_mp[0 : MP_e.N_mp]
                Ey_n_beam = 0.0 * MP_e.y_mp[0 : MP_e.N_mp]
            else:
                # compute beam electric field
                Ex_n_beam, Ey_n_beam = self.PyPIC_state.gather(
                    MP_e.x_mp[0 : MP_e.N_mp], MP_e.y_mp[0 : MP_e.N_mp]
                )
        else:
            Ex_n_beam = 0.0
            Ey_n_beam = 0.0
        return Ex_n_beam, Ey_n_beam


extra_allowed_kwargs = {
    "x_beam_offset",
    "y_beam_offset",
    "probes_position",
    "enable_kick_x",
    "enable_kick_y",
}


class Ecloud(object):
    def generate_twin_ecloud_with_shared_space_charge(self):
        """Generate an identical Ecloud objet with shared space-charge member."""

        if hasattr(self, "efieldmap"):
            raise ValueError(
                "Ecloud has been replaced with field map. I cannot generate a twin ecloud!"
            )
        return Ecloud(
            self.L_ecloud,
            self.slicer,
            self.Dt_ref,
            self.pyecl_input_folder,
            self.flag_clean_slices,
            self.slice_by_slice_mode,
            self.spacech_ele,
            self.kick_mode_for_beam_field,
            self.beam_monitor,
            self.verbose,
            self.save_pyecl_outp_as,
            self.force_interp_at_substeps_interacting_slices,
            **self.kwargs
        )

    def __init__(
        self,
        L_ecloud,
        slicer,
        Dt_ref,
        pyecl_input_folder="./",
        flag_clean_slices=False,
        slice_by_slice_mode=False,
        space_charge_obj=None,
        kick_mode_for_beam_field=False,
        beam_monitor=None,
        verbose=False,
        save_pyecl_outp_as=None,
        force_interp_at_substeps_interacting_slices=False,
        **kwargs
    ):
        """
        Construct an e-cloud object that can be inserted in a PyHEADTAIL machine

        Parameters
        ---------

        L_ecloud : m
            Length of the e-cloud interaction

        slicer :
            PyHEADTAIL slicer object, used to define slices for e-cloud insteraction.
            Needs to be provided only if slice_by_slice_mode is False.

        Dt_ref : s
            Target duration of the sub-steps perfomed in each slice.

        pyecl_input_folder : path
            Folder containing the PyECLOUD input files defining the e-cloud.

        flag_clean_slices : {True, False}
            If True, slicing is redone before the e-cloud interation.
            This flag has no effect is slice_by_slice_mode is True.

        slice_by_slice_mode : {True, False}

            - If False, the e-cloud receives a full bunch, slicing is done interally,
              the cloud is automatically re-initialized after each interaction.
            - If True, the e-cloud receives one slice at a time (the slice object
              should have metadata in a member called slice_info. The reinitialization
              of the cloud is done based on the meta-data or esplicitly by the user.

        space_charge_obj :

            - If None a space-charge object (Particle In Cell) is constructed for
              the e-cloud
            - If not None the provided space-charge objeci is used

        kick_mode_for_beam_field : {True, False}
            If True, the force of the beam on the electrons is applied as a
            discrete kick (used mainly for fast beam-ion simulations).

        beam_monitor :
            PyHEADTAIL beam-monitor, used sometimes for debug purposes.

        verbose : {True, False}

        save_pyecl_outp_as : path
            File in which cloud evolution is stored.

        force_reinterp_at_substeps_interacting_slices : {True, False}
            Fields from beams and clouds are re-interpolated at each subsstep.

        x_beam_offset : m
            Horizontal position of the PyHEADTAIL reference trajectoy in
            the PyECLOUD referece system.

        y_beam_offset: m
            Vertical position of the PyHEADTAIL reference trajectoy in
            the PyECLOUD referece system.

        probes_position : dict
            Positions at which electron density and field can be measured.

        enable_kick_x :
            Enable horizontal kick from the cloud on the beam.

        enable_kick_y :
            Enable vertical kick from the cloud on the beam.

        **kwargs :
            Any input parameter of PyECLOUD can be passes as a keyword arguments.
            Parameters definded in the input files are overridden by those passas as
            keyword arguments.

        Additional information
        ----------------------
        After building the object, the following members can be set to true to record
        additional information (which is then attached as a member to the ecloud object
        itself. After setting any of these ot true the [ecloud]._reinitialize
        function needs to be called to prepare the data storage, which also resets cloud
        state.

        [ecloud].save_ele_distributions_last_track
        [ecloud].save_ele_potential_and_field
        [ecloud].save_ele_potential
        [ecloud].save_ele_field
        [ecloud].save_ele_MP_position
        [ecloud].save_ele_MP_velocity
        [ecloud].save_ele_MP_size

        [ecloud].save_beam_distributions_last_track
        [ecloud].save_beam_potential_and_field
        [ecloud].save_beam_potential
        [ecloud].save_beam_field


        """

        print("PyECLOUD Version 8.7.0")

        # These git commands return the hash and the branch of the specified git directory.
        path_to_git = os.path.dirname(os.path.abspath(__file__)) + "/.git"
        cmd_hash = "git --git-dir %s rev-parse HEAD" % path_to_git
        cmd_branch = "git --git-dir %s rev-parse --abbrev-ref HEAD" % path_to_git
        try:
            git_hash = "git hash: %s" % (
                subprocess.check_output(cmd_hash.split()).split()[0]
            )
        except Exception as e:
            git_hash = "Retrieving git hash failed"
            print(e)
        print(git_hash)

        try:
            git_branch = "git branch: %s" % (
                subprocess.check_output(cmd_branch.split()).split()[0]
            )
        except Exception as e:
            git_branch = "Retrieving git branch failed"
            print(e)
        print(git_branch)

        print("PyHEADTAIL module")
        print("Initializing ecloud from folder: " + pyecl_input_folder)
        self.slicer = slicer
        self.Dt_ref = Dt_ref
        self.L_ecloud = L_ecloud

        self.pyecl_input_folder = pyecl_input_folder
        self.kwargs = kwargs

        self.force_interp_at_substeps_interacting_slices = (
            force_interp_at_substeps_interacting_slices
        )

        print(f"Reinterp fields at substeps for interacting slices: {self.force_interp_at_substeps_interacting_slices}")

        self.cloudsim = bsim.BuildupSimulation(
            pyecl_input_folder=pyecl_input_folder,
            skip_beam=True,
            spacech_ele=space_charge_obj,
            ignore_kwargs=extra_allowed_kwargs,
            skip_pyeclsaver=(save_pyecl_outp_as is None),
            filen_main_outp=save_pyecl_outp_as,
            **self.kwargs
        )

        if self.cloudsim.config_dict["track_method"] == "Boris":
            pass
        elif self.cloudsim.config_dict["track_method"] == "BorisMultipole":
            pass
        else:
            raise ValueError(
                """track_method should be 'Boris' or 'BorisMultipole' - others are not implemented in the PyEC4PyHT module"""
            )

        self.x_beam_offset = 0.0
        self.y_beam_offset = 0.0
        if "x_beam_offset" in kwargs:
            self.x_beam_offset = kwargs["x_beam_offset"]
        if "y_beam_offset" in kwargs:
            self.y_beam_offset = kwargs["y_beam_offset"]

        self.enable_kick_x = True
        self.enable_kick_y = True
        if "enable_kick_x" in kwargs:
            self.enable_kick_x = kwargs["enable_kick_x"]
        if not self.enable_kick_x:
            print("Horizontal kick on the beam is disabled!")
        if "enable_kick_y" in kwargs:
            self.enable_kick_y = kwargs["enable_kick_y"]
        if not self.enable_kick_y:
            print("Vertical kick on the beam is disabled!")

        # initialize proton density probes
        self.save_ele_field_probes = False
        self.x_probes = -1
        self.y_probes = -1
        self.Ex_ele_last_track_at_probes = -1
        self.Ey_ele_last_track_at_probes = -1
        if "probes_position" in list(kwargs.keys()):
            self.save_ele_field_probes = True
            self.probes_position = kwargs["probes_position"]
            self.N_probes = len(self.probes_position)
            self.x_probes = []
            self.y_probes = []
            for ii_probe in range(self.N_probes):
                self.x_probes.append(self.probes_position[ii_probe]["x"])
                self.y_probes.append(self.probes_position[ii_probe]["y"])

            self.x_probes = np.array(self.x_probes)
            self.y_probes = np.array(self.y_probes)

        self.N_tracks = 0

        # self.cloudsim.spacech_ele.flag_decimate = False

        if self.cloudsim.flag_multiple_clouds:
            raise ValueError("Multiple clouds not yet tested in PyEC4PyHT!")

        self.save_ele_distributions_last_track = False
        self.save_ele_potential_and_field = False
        self.save_ele_potential = False
        self.save_ele_field = False
        self.save_ele_MP_position = False
        self.save_ele_MP_velocity = False
        self.save_ele_MP_size = False

        self.save_beam_distributions_last_track = False
        self.save_beam_potential_and_field = False
        self.save_beam_potential = False
        self.save_beam_field = False

        self.track_only_first_time = False

        self.initial_MP_e_clouds = [
            cl.MP_e.extract_dict() for cl in self.cloudsim.cloud_list
        ]

        self.flag_clean_slices = flag_clean_slices

        self.beam_PyPIC_state = self.cloudsim.spacech_ele.PyPICobj.get_state_object()

        self.slice_by_slice_mode = slice_by_slice_mode
        if self.slice_by_slice_mode:
            assert(slicer is None)
            self.track = self._track_in_single_slice_mode
            self.finalize_and_reinitialize = self._finalize_and_reinitialize

        self.spacech_ele = self.cloudsim.spacech_ele  # For backwards compatibility

        self.kick_mode_for_beam_field = kick_mode_for_beam_field
        self.beam_monitor = beam_monitor

        self.verbose = verbose
        self.save_pyecl_outp_as = save_pyecl_outp_as

        self.i_reinit = 0
        self.t_sim = 0.0
        self.i_curr_bunch = -1

    #    @profile
    def track(self, beam):

        if self.track_only_first_time:
            if self.N_tracks > 0:
                print("Warning: Track skipped because track_only_first_time is True.")
                return

        if self.verbose:
            start_time = time.mktime(time.localtime())

        self._reinitialize()

        if hasattr(beam.particlenumber_per_mp, "__iter__"):
            raise ValueError("ecloud module assumes same size for all beam MPs")

        if self.flag_clean_slices:
            beam.clean_slices()

        slices = beam.get_slices(self.slicer)

        for i in range(slices.n_slices - 1, -1, -1):
            if self.verbose:
                print(("Slice %d/%d" % (i, slices.n_slices)))

            # select particles in the slice
            ix = slices.particle_indices_of_slice(i)

            # slice size and time step
            dz = slices.z_bins[i + 1] - slices.z_bins[i]

            self._track_single_slice(beam, ix, dz, force_pyecl_newpass=(i == 0))

        # Used by Lotta to debug fastion mode
        if self.beam_monitor is not None:
            self.beam_monitor.dump(beam)

        self._finalize()

        if self.verbose:
            stop_time = time.mktime(time.localtime())
            print("Done track %d in %.1f s" % (self.N_tracks, stop_time - start_time))

        self.N_tracks += 1

    def replace_with_recorded_field_map(self, delete_ecloud_data=True):

        if self.track_only_first_time:
            print(
                "Warning: replace_with_recorded_field_map resets track_only_first_time = False"
            )
            self.track_only_first_time = False

        if not hasattr(self, "efieldmap"):
            from .Transverse_Efield_map_for_frozen_cloud import Transverse_Efield_map

            self.efieldmap = Transverse_Efield_map(
                xg=self.spacech_ele.xg,
                yg=self.spacech_ele.yg,
                Ex=self.Ex_ele_last_track,
                Ey=self.Ey_ele_last_track,
                L_interaction=self.L_ecloud,
                slicer=self.slicer,
                flag_clean_slices=True,
                x_beam_offset=self.x_beam_offset,
                y_beam_offset=self.y_beam_offset,
                slice_by_slice_mode=self.slice_by_slice_mode,
            )

            self._ecloud_track = self.track

            self.track = self.efieldmap.track
            self.finalize_and_reinitialize = self.efieldmap.finalize_and_reinitialize

            if delete_ecloud_data:
                self.spacech_ele = None
                self.cloudsim = None

        else:
            print("Warning: efieldmap already exists. I do nothing.")

    def track_once_and_replace_with_recorded_field_map(
        self, bunch, delete_ecloud_data=True
    ):
        self.save_ele_field = True
        self.track_only_first_time = True
        if self.slice_by_slice_mode:
            if not hasattr(bunch, "__iter__"):
                raise ValueError("A list of slices should be provided!")
            self._reinitialize()
            for slc in bunch:
                self.track(slc)
            self._finalize()
        else:
            self.track(bunch)
        self.save_ele_field = False
        self.track_only_first_time = False
        self.replace_with_recorded_field_map(delete_ecloud_data=delete_ecloud_data)

    def _track_single_slice(self, slic, ix, dz, force_pyecl_newpass=False):

        spacech_ele = self.cloudsim.spacech_ele

        # Check if the slice interacts with the beam
        if hasattr(slic, "slice_info"):
            if "interact_with_EC" in list(slic.slice_info.keys()):
                interact_with_EC = slic.slice_info["interact_with_EC"]
            else:
                interact_with_EC = True
        else:
            interact_with_EC = True

        # Compute slice length
        dt_slice = dz / (slic.beta * c)

        # Check if sub-slicing is needed
        if self.cloudsim.config_dict["Dt"] is not None:
            if dt_slice > self.cloudsim.config_dict["Dt"]:
                if interact_with_EC:
                    raise ValueError(
                        "Slices that interact with the cloud cannot be longer than the buildup timestep!"
                    )

                N_cloud_steps = np.int_(
                    np.ceil(dt_slice / self.cloudsim.config_dict["Dt"])
                )
                dt_cloud_step = dt_slice / N_cloud_steps
                dt_array = np.array(N_cloud_steps * [dt_cloud_step])
            else:
                dt_array = np.array([dt_slice])
        else:
            dt_array = np.array([dt_slice])

        # Acquire bunch passage information
        if hasattr(slic, "slice_info"):
            if "info_parent_bunch" in list(slic.slice_info.keys()):

                # check if first slice of first bunch
                if (
                    slic.slice_info["info_parent_bunch"]["i_bunch"] == 0
                    and slic.slice_info["i_slice"] == 0
                ):
                    self.finalize_and_reinitialize()

                # check if new passage
                if slic.slice_info["info_parent_bunch"]["i_bunch"] > self.i_curr_bunch:
                    self.i_curr_bunch = slic.slice_info["info_parent_bunch"]["i_bunch"]
                    new_pass = True
                else:
                    new_pass = force_pyecl_newpass

            else:
                new_pass = force_pyecl_newpass
                self.i_curr_bunch = 0
        else:
            new_pass = force_pyecl_newpass
            self.i_curr_bunch = 0

        # Cloud simulation
        for i_clou_step, dt in enumerate(dt_array):

            # define substep
            if dt > self.Dt_ref:
                N_sub_steps = int(np.round(dt / self.Dt_ref))
            else:
                N_sub_steps = 1

            Dt_substep = dt / N_sub_steps
            # print Dt_substep, N_sub_steps, dt

            if len(ix) == 0 or not interact_with_EC:  # no particles in the beam

                # build dummy beamtim object
                dummybeamtim = DummyBeamTim(None)

                dummybeamtim.lam_t_curr = 0.0
                dummybeamtim.sigmax = 0.0
                dummybeamtim.sigmay = 0.0
                dummybeamtim.x_beam_pos = 0.0
                dummybeamtim.y_beam_pos = 0.0
            else:

                # beam field
                self.beam_PyPIC_state.scatter(
                    x_mp=slic.x[ix] + self.x_beam_offset,
                    y_mp=slic.y[ix] + self.y_beam_offset,
                    nel_mp=slic.x[ix] * 0.0 + slic.particlenumber_per_mp / dz,
                    charge=slic.charge,
                )
                self.cloudsim.spacech_ele.PyPICobj.solve_states([self.beam_PyPIC_state])

                # build dummy beamtim object
                dummybeamtim = DummyBeamTim(self.beam_PyPIC_state)

                dummybeamtim.lam_t_curr = np.mean(
                    slic.particlenumber_per_mp / dz
                ) * len(ix)
                dummybeamtim.sigmax = np.std(slic.x[ix])
                dummybeamtim.sigmay = np.std(slic.y[ix])
                dummybeamtim.x_beam_pos = np.mean(slic.x[ix]) + self.x_beam_offset
                dummybeamtim.y_beam_pos = np.mean(slic.y[ix]) + self.y_beam_offset

            dummybeamtim.tt_curr = self.t_sim  # In order to have the PIC activated
            dummybeamtim.Dt_curr = dt
            dummybeamtim.pass_numb = self.i_curr_bunch
            dummybeamtim.flag_new_bunch_pass = new_pass

            # Force space charge recomputation
            force_recompute_space_charge = interact_with_EC or (
                i_clou_step == 0
            )  # we always force at the first step, as we don't know the state of the PIC

            # Disable cleanings and regenerations
            skip_MP_cleaning = interact_with_EC
            skip_MP_regen = interact_with_EC

            # print(dummybeamtim.tt_curr, dummybeamtim.flag_new_bunch_pass, force_recompute_space_charge)

            # Perform cloud simulation step
            self.cloudsim.sim_time_step(
                beamtim_obj=dummybeamtim,
                Dt_substep_custom=Dt_substep,
                N_sub_steps_custom=N_sub_steps,
                kick_mode_for_beam_field=self.kick_mode_for_beam_field,
                force_recompute_space_charge=force_recompute_space_charge,
                skip_MP_cleaning=skip_MP_cleaning,
                skip_MP_regen=skip_MP_regen,
                force_reinterp_fields_at_substeps=(interact_with_EC
                    and self.force_interp_at_substeps_interacting_slices)
            )

            if interact_with_EC:
                # Build MP_system-like object with beam coordinates
                MP_p = Empty()
                MP_p.x_mp = slic.x[ix] + self.x_beam_offset
                MP_p.y_mp = slic.y[ix] + self.y_beam_offset
                MP_p.N_mp = len(slic.x[ix])

                ## compute cloud field on beam particles
                Ex_sc_p, Ey_sc_p = spacech_ele.get_sc_eletric_field(MP_p)

                ## kick beam particles
                fact_kick = (
                    slic.charge
                    / (slic.mass * slic.beta * slic.beta * slic.gamma * c * c)
                    * self.L_ecloud
                )
                if self.enable_kick_x:
                    slic.xp[ix] += fact_kick * Ex_sc_p
                if self.enable_kick_y:
                    slic.yp[ix] += fact_kick * Ey_sc_p

            ## Diagnostics
            MPe_for_save = self.cloudsim.cloud_list[0].MP_e

            if self.save_ele_distributions_last_track:
                self.rho_ele_last_track.append(spacech_ele.rho.copy())

            if self.save_ele_potential:
                self.phi_ele_last_track.append(spacech_ele.phi.copy())

            if self.save_ele_field:
                self.Ex_ele_last_track.append(spacech_ele.efx.copy())
                self.Ey_ele_last_track.append(spacech_ele.efy.copy())

            if self.save_beam_distributions_last_track:
                self.rho_beam_last_track.append(self.beam_PyPIC_state.rho.copy())

            if self.save_beam_potential:
                self.phi_beam_last_track.append(self.beam_PyPIC_state.phi.copy())

            if self.save_beam_field:
                self.Ex_beam_last_track.append(self.beam_PyPIC_state.efx.copy())
                self.Ey_beam_last_track.append(self.beam_PyPIC_state.efy.copy())

            if self.save_ele_MP_position:
                self.x_MP_last_track.append(MPe_for_save.x_mp.copy())
                self.y_MP_last_track.append(MPe_for_save.y_mp.copy())

            if self.save_ele_MP_velocity:
                self.vx_MP_last_track.append(MPe_for_save.vx_mp.copy())
                self.vy_MP_last_track.append(MPe_for_save.vy_mp.copy())

            if self.save_ele_MP_size:
                self.nel_MP_last_track.append(MPe_for_save.nel_mp.copy())

            if (
                self.save_ele_MP_position
                or self.save_ele_MP_velocity
                or self.save_ele_MP_size
            ):
                self.N_MP_last_track.append(MPe_for_save.N_mp)

            if self.save_ele_field_probes:
                MP_probes = Empty()
                MP_probes.x_mp = self.x_probes
                MP_probes.y_mp = self.y_probes
                MP_probes.nel_mp = self.x_probes * 0.0 + 1.0  # fictitious charge of 1 C
                MP_probes.N_mp = len(self.x_probes)
                Ex_sc_probe, Ey_sc_probe = spacech_ele.get_sc_eletric_field(MP_probes)

                self.Ex_ele_last_track_at_probes.append(Ex_sc_probe.copy())
                self.Ey_ele_last_track_at_probes.append(Ey_sc_probe.copy())

            self.t_sim += dt
            new_pass = False  # it can be true only for the first sub-slice of a slice

    def _reinitialize(self):

        cc = mlm.obj_from_dict(self.cloudsim.config_dict)

        for thiscloud, initdict in zip(
            self.cloudsim.cloud_list, self.initial_MP_e_clouds
        ):
            thiscloud.MP_e.init_from_dict(initdict)
            thiscloud.MP_e.set_nel_mp_ref(thiscloud.MP_e.nel_mp_ref_0)

            thisconf = thiscloud.config_dict

            if thiscloud.pyeclsaver is not None:
                thiscloud.pyeclsaver.extract_sey = False
                thiscloud.pyeclsaver.start_observing(
                    cc.Dt,
                    thiscloud.MP_e,
                    None,
                    thiscloud.impact_man,
                    thisconf.r_center,
                    thisconf.Dt_En_hist,
                    thisconf.logfile_path,
                    thisconf.progress_path,
                    flag_detailed_MP_info=thisconf.flag_detailed_MP_info,
                    flag_movie=thisconf.flag_movie,
                    flag_sc_movie=thisconf.flag_sc_movie,
                    save_mp_state_time_file=thisconf.save_mp_state_time_file,
                    flag_presence_sec_beams=self.cloudsim.flag_presence_sec_beams,
                    sec_beams_list=self.cloudsim.sec_beams_list,
                    dec_fac_secbeam_prof=thisconf.dec_fac_secbeam_prof,
                    el_density_probes=thisconf.el_density_probes,
                    save_simulation_state_time_file=thisconf.save_simulation_state_time_file,
                    x_min_hist_det=thisconf.x_min_hist_det,
                    x_max_hist_det=thisconf.x_max_hist_det,
                    y_min_hist_det=thisconf.y_min_hist_det,
                    y_max_hist_det=thisconf.y_max_hist_det,
                    Dx_hist_det=thisconf.Dx_hist_det,
                    dec_fact_out=cc.dec_fact_out,
                    stopfile=cc.stopfile,
                    filen_main_outp=thisconf.filen_main_outp,
                    flag_cos_angle_hist=thisconf.flag_cos_angle_hist,
                    cos_angle_width=thisconf.cos_angle_width,
                    flag_multiple_clouds=(len(self.cloudsim.cloud_list) > 1),
                    cloud_name=thisconf.cloud_name,
                    flag_last_cloud=(thiscloud is self.cloudsim.cloud_list[-1]),
                )

                thiscloud.pyeclsaver.filen_main_outp = (
                    thiscloud.pyeclsaver.filen_main_outp.split(".mat")[0].split(
                        "__iter"
                    )[0]
                    + "__iter%d.mat" % self.i_reinit
                )

        if self.save_ele_distributions_last_track:
            self.rho_ele_last_track = []

        if self.save_ele_potential_and_field:
            self.save_ele_potential = True
            self.save_ele_field = True

        if self.save_ele_potential:
            self.phi_ele_last_track = []

        if self.save_ele_field:
            self.Ex_ele_last_track = []
            self.Ey_ele_last_track = []

        if self.save_beam_distributions_last_track:
            self.rho_beam_last_track = []

        if self.save_beam_potential_and_field:
            self.save_beam_potential = True
            self.save_beam_field = True

        if self.save_beam_potential:
            self.phi_beam_last_track = []

        if self.save_beam_field:
            self.Ex_beam_last_track = []
            self.Ey_beam_last_track = []

        if self.save_ele_MP_position:
            self.x_MP_last_track = []
            self.y_MP_last_track = []

        if self.save_ele_MP_velocity:
            self.vx_MP_last_track = []
            self.vy_MP_last_track = []

        if self.save_ele_MP_size:
            self.nel_MP_last_track = []

        if (
            self.save_ele_MP_position
            or self.save_ele_MP_velocity
            or self.save_ele_MP_size
        ):
            self.N_MP_last_track = []

        if self.save_ele_field_probes:
            self.Ex_ele_last_track_at_probes = []
            self.Ey_ele_last_track_at_probes = []

        # ~ self.t_sim = 0.
        self.i_curr_bunch = -1
        self.i_reinit += 1

    def _finalize(self):

        if self.save_ele_distributions_last_track:
            self.rho_ele_last_track = np.array(self.rho_ele_last_track[::-1])

        if self.save_ele_potential:
            self.phi_ele_last_track = np.array(self.phi_ele_last_track[::-1])

        if self.save_ele_field:
            self.Ex_ele_last_track = np.array(self.Ex_ele_last_track[::-1])
            self.Ey_ele_last_track = np.array(self.Ey_ele_last_track[::-1])

        if self.save_beam_distributions_last_track:
            self.rho_beam_last_track = np.array(self.rho_beam_last_track[::-1])

        if self.save_beam_potential:
            self.phi_beam_last_track = np.array(self.phi_beam_last_track[::-1])

        if self.save_beam_field:
            self.Ex_beam_last_track = np.array(self.Ex_beam_last_track[::-1])
            self.Ey_beam_last_track = np.array(self.Ey_beam_last_track[::-1])

        if self.save_ele_MP_position:
            self.x_MP_last_track = np.array(self.x_MP_last_track[::-1])
            self.y_MP_last_track = np.array(self.y_MP_last_track[::-1])

        if self.save_ele_MP_velocity:
            self.vx_MP_last_track = np.array(self.vx_MP_last_track[::-1])
            self.vy_MP_last_track = np.array(self.vy_MP_last_track[::-1])

        if self.save_ele_MP_size:
            self.nel_MP_last_track = np.array(self.nel_MP_last_track[::-1])

        if (
            self.save_ele_MP_position
            or self.save_ele_MP_velocity
            or self.save_ele_MP_size
        ):
            self.N_MP_last_track = np.array(self.N_MP_last_track[::-1])

        if self.save_ele_field_probes:
            self.Ex_ele_last_track_at_probes = np.array(
                self.Ex_ele_last_track_at_probes[::-1]
            )
            self.Ey_ele_last_track_at_probes = np.array(
                self.Ey_ele_last_track_at_probes[::-1]
            )

    def _finalize_and_reinitialize(self):
        print("Exec. finalize and reinitialize")
        self._finalize()
        self._reinitialize()

    def _track_in_single_slice_mode(self, beam):

        if hasattr(beam.particlenumber_per_mp, "__iter__"):
            raise ValueError("ecloud module assumes same size for all beam MPs")

        if self.flag_clean_slices:
            raise ValueError("track cannot clean the slices in slice-by-slice mode! ")

        if beam.slice_info != "unsliced":
            dz = beam.slice_info["z_bin_right"] - beam.slice_info["z_bin_left"]
            self._track_single_slice(
                beam, ix=np.arange(beam.macroparticlenumber), dz=dz
            )

    def remove_savers(self):
        for thiscloud in self.cloudsim.cloud_list:
            thiscloud.pyeclsaver = None