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BioCamrickwierenga
BioCam
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rickwierenga
authored
Update Hamilton TipRack Names (#674)
Co-authored-by: Rick Wierenga <[email protected]>
1 parent ea16859 commit 8781755

20 files changed

+314
-200
lines changed

‎docs/resources/carrier/mfx-carrier/mfx_carrier.ipynb‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -243,8 +243,8 @@
243243
}
244244
],
245245
"source": [
246-
"from pylabrobot.resources import HTF\n",
247-
"my_tip_rack = HTF(name=\"my_tip_rack\")\n",
246+
"from pylabrobot.resources import hamilton_96_tiprack_1000ul_filter\n",
247+
"my_tip_rack = hamilton_96_tiprack_1000ul_filter(name=\"my_tip_rack\")\n",
248248
"carrier[3] = my_tip_rack\n",
249249
"my_tip_rack.parent"
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]

‎docs/user_guide/00_liquid-handling/hamilton-star/basic.ipynb‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -115,7 +115,7 @@
115115
"- {class}`~pylabrobot.resources.hamilton.tip_carriers.TIP_CAR_480_A00` tip carrier\n",
116116
"- {class}`~pylabrobot.resources.hamilton.plate_carriers.PLT_CAR_L5AC_A00` plate carrier\n",
117117
"- {class}`~pylabrobot.resources.corning_costar.plates.Cor_96_wellplate_360ul_Fb` wells\n",
118-
"- {class}`~pylabrobot.resources.hamilton.tip_racks.HTF` tips"
118+
"- {class}`~pylabrobot.resources.hamilton.tip_racks.hamilton_96_tiprack_1000ul_filter` tips"
119119
]
120120
},
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{
@@ -128,7 +128,7 @@
128128
" TIP_CAR_480_A00,\n",
129129
" PLT_CAR_L5AC_A00,\n",
130130
" Cor_96_wellplate_360ul_Fb,\n",
131-
" HTF,\n",
131+
" hamilton_96_tiprack_1000ul_filter,\n",
132132
")"
133133
]
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},
@@ -146,7 +146,7 @@
146146
"outputs": [],
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"source": [
148148
"tip_car = TIP_CAR_480_A00(name=\"tip carrier\")\n",
149-
"tip_car[0] = HTF(name=\"tips_01\")"
149+
"tip_car[0] = hamilton_96_tiprack_1000ul_filter(name=\"tips_01\")"
150150
]
151151
},
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{

‎docs/user_guide/00_liquid-handling/hamilton-star/foil.ipynb‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,7 @@
3434
"from pylabrobot.resources import (\n",
3535
" TIP_CAR_480_A00,\n",
3636
" PLT_CAR_L5AC_A00,\n",
37-
" HT,\n",
37+
" hamilton_96_tiprack_1000ul,\n",
3838
" AGenBio_4_wellplate_Vb\n",
3939
")\n",
4040
"\n",
@@ -44,7 +44,7 @@
4444
"\n",
4545
"# assign a tip rack\n",
4646
"tip_carrier = TIP_CAR_480_A00(name=\"tip_carrier\")\n",
47-
"tip_carrier[1] = tip_rack = HT(name=\"tip_rack\")\n",
47+
"tip_carrier[1] = tip_rack = hamilton_96_tiprack_1000ul(name=\"tip_rack\")\n",
4848
"lh.deck.assign_child_resource(tip_carrier, rails=1)\n",
4949
"\n",
5050
"# assign a plate\n",

‎docs/user_guide/00_liquid-handling/hamilton-star/hamilton-liquid-classes.ipynb‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -70,11 +70,11 @@
7070
" TIP_CAR_480_A00,\n",
7171
" PLT_CAR_L5AC_A00,\n",
7272
" Cor_96_wellplate_360ul_Fb,\n",
73-
" HTF,\n",
73+
" hamilton_96_tiprack_1000ul_filter,\n",
7474
")\n",
7575
"\n",
7676
"tip_car = TIP_CAR_480_A00(name=\"tip carrier\")\n",
77-
"tip_car[0] = tr = HTF(name=\"tips_01\")\n",
77+
"tip_car[0] = tr = hamilton_96_tiprack_1000ul_filter(name=\"tips_01\")\n",
7878
"lh.deck.assign_child_resource(tip_car, rails=3)\n",
7979
"\n",
8080
"plt_car = PLT_CAR_L5AC_A00(name=\"plate carrier\")\n",

‎docs/user_guide/00_liquid-handling/moving-channels-around.ipynb‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -33,19 +33,19 @@
3333
},
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{
3535
"cell_type": "code",
36-
"execution_count": 1,
36+
"execution_count": null,
3737
"metadata": {},
3838
"outputs": [],
3939
"source": [
4040
"from pylabrobot.liquid_handling import LiquidHandler, STAR\n",
41-
"from pylabrobot.resources import STARDeck, TIP_CAR_480_A00, HTF\n",
41+
"from pylabrobot.resources import STARDeck, TIP_CAR_480_A00, hamilton_96_tiprack_1000ul_filter\n",
4242
"\n",
4343
"lh = LiquidHandler(backend=STAR(), deck=STARDeck())\n",
4444
"await lh.setup()\n",
4545
"\n",
4646
"# assign a tip rack\n",
4747
"tip_carrier = TIP_CAR_480_A00(name=\"tip_carrier\")\n",
48-
"tip_carrier[0] = tip_rack = HTF(name=\"tip_rack\")\n",
48+
"tip_carrier[0] = tip_rack = hamilton_96_tiprack_1000ul_filter(name=\"tip_rack\")\n",
4949
"lh.deck.assign_child_resource(tip_carrier, rails=0)"
5050
]
5151
},

‎docs/user_guide/00_liquid-handling/tutorial_tip_inventory_consolidation.ipynb‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -93,10 +93,10 @@
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"metadata": {},
9494
"outputs": [],
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"source": [
96-
"from pylabrobot.resources import HTF, TIP_CAR_480_A00\n",
96+
"from pylabrobot.resources import hamilton_96_tiprack_1000ul_filter, TIP_CAR_480_A00\n",
9797
"tip_carrier = TIP_CAR_480_A00(name=\"tip_carrier\")\n",
98-
"tip_carrier[0] = tr0 = HTF(name=\"tr0\", with_tips=True)\n",
99-
"tip_carrier[1] = tr1 = HTF(name=\"tr1\", with_tips=False)\n",
98+
"tip_carrier[0] = tr0 = hamilton_96_tiprack_1000ul_filter(name=\"tr0\", with_tips=True)\n",
99+
"tip_carrier[1] = tr1 = hamilton_96_tiprack_1000ul_filter(name=\"tr1\", with_tips=False)\n",
100100
"deck.assign_child_resource(tip_carrier, rails=10)"
101101
]
102102
},

‎docs/user_guide/machine-agnostic-features/tip-spot-generators.ipynb‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -11,14 +11,14 @@
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},
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{
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"cell_type": "code",
14-
"execution_count": 1,
14+
"execution_count": null,
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"metadata": {},
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"outputs": [],
1717
"source": [
1818
"# instantiate some hamilton tip racks as an example\n",
19-
"from pylabrobot.resources.hamilton import HT # an example tip rack\n",
20-
"tip_rack_0 = HT(name='tip_rack_0')\n",
21-
"tip_rack_1 = HT(name='tip_rack_1')\n",
19+
"from pylabrobot.resources.hamilton import hamilton_96_tiprack_1000ul # an example tip rack\n",
20+
"tip_rack_0 = hamilton_96_tiprack_1000ul(name='tip_rack_0')\n",
21+
"tip_rack_1 = hamilton_96_tiprack_1000ul(name='tip_rack_1')\n",
2222
"tip_racks = [tip_rack_0, tip_rack_1]"
2323
]
2424
},

‎docs/user_guide/machine-agnostic-features/using-the-visualizer.ipynb‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -134,7 +134,7 @@
134134
},
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{
136136
"cell_type": "code",
137-
"execution_count": 6,
137+
"execution_count": null,
138138
"id": "c8c464c8",
139139
"metadata": {},
140140
"outputs": [],
@@ -143,7 +143,7 @@
143143
" TIP_CAR_480_A00,\n",
144144
" PLT_CAR_L5AC_A00,\n",
145145
" Cor_96_wellplate_360ul_Fb,\n",
146-
" HTF\n",
146+
" hamilton_96_tiprack_1000ul_filter\n",
147147
")"
148148
]
149149
},
@@ -155,11 +155,11 @@
155155
"outputs": [],
156156
"source": [
157157
"tip_car = TIP_CAR_480_A00(name='tip carrier')\n",
158-
"tip_car[0] = tip_rack1 = HTF(name='tips_01', with_tips=False)\n",
159-
"tip_car[1] = tip_rack2 = HTF(name='tips_02', with_tips=False)\n",
160-
"tip_car[2] = tip_rack3 = HTF(name='tips_03', with_tips=False)\n",
161-
"tip_car[3] = tip_rack4 = HTF(name='tips_04', with_tips=False)\n",
162-
"tip_car[4] = tip_rack5 = HTF(name='tips_05', with_tips=False)"
158+
"tip_car[0] = tip_rack1 = hamilton_96_tiprack_1000ul_filter(name='tips_01', with_tips=False)\n",
159+
"tip_car[1] = tip_rack2 = hamilton_96_tiprack_1000ul_filter(name='tips_02', with_tips=False)\n",
160+
"tip_car[2] = tip_rack3 = hamilton_96_tiprack_1000ul_filter(name='tips_03', with_tips=False)\n",
161+
"tip_car[3] = tip_rack4 = hamilton_96_tiprack_1000ul_filter(name='tips_04', with_tips=False)\n",
162+
"tip_car[4] = tip_rack5 = hamilton_96_tiprack_1000ul_filter(name='tips_05', with_tips=False)"
163163
]
164164
},
165165
{

‎docs/user_guide/machine-agnostic-features/using-trackers.ipynb‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -31,7 +31,7 @@
3131
"from pylabrobot.liquid_handling.backends.chatterbox import LiquidHandlerChatterboxBackend\n",
3232
"from pylabrobot.resources import (\n",
3333
" TIP_CAR_480_A00,\n",
34-
" HTF,\n",
34+
" hamilton_96_tiprack_1000ul_filter,\n",
3535
" PLT_CAR_L5AC_A00,\n",
3636
" Cor_96_wellplate_360ul_Fb,\n",
3737
" set_tip_tracking,\n",
@@ -105,7 +105,7 @@
105105
"metadata": {},
106106
"outputs": [],
107107
"source": [
108-
"tip_carrier[0] = tip_rack = HTF(name=\"tip rack\")"
108+
"tip_carrier[0] = tip_rack = hamilton_96_tiprack_1000ul_filter(name=\"tip rack\")"
109109
]
110110
},
111111
{
@@ -142,7 +142,7 @@
142142
"metadata": {},
143143
"outputs": [],
144144
"source": [
145-
"tip_carrier[1] = empty_tip_rack = HTF(name=\"empty tip rack\", with_tips=False)"
145+
"tip_carrier[1] = empty_tip_rack = hamilton_96_tiprack_1000ul_filter(name=\"empty tip rack\", with_tips=False)"
146146
]
147147
},
148148
{

‎docs/user_guide/machine-agnostic-features/validation.ipynb‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -45,9 +45,9 @@
4545
"metadata": {},
4646
"outputs": [],
4747
"source": [
48-
"from pylabrobot.resources import TIP_CAR_480_A00, HT\n",
48+
"from pylabrobot.resources import TIP_CAR_480_A00, hamilton_96_tiprack_1000ul\n",
4949
"tip_car = TIP_CAR_480_A00(name=\"tip_car\")\n",
50-
"tip_car[0] = tr = HT(name=\"ht\")\n",
50+
"tip_car[0] = tr = hamilton_96_tiprack_1000ul(name=\"ht\")\n",
5151
"lh.deck.assign_child_resource(tip_car, rails=1)"
5252
]
5353
},

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