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v0.1.0 Candidate #69

Merged
merged 108 commits into from
Jul 26, 2024
Merged

v0.1.0 Candidate #69

merged 108 commits into from
Jul 26, 2024

Commits on Apr 16, 2023

  1. Simulation templates

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Commits on Apr 20, 2023

  1. Merge branch 'dev' into sim

    @cpanuski
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Commits on Apr 24, 2023

  1. Merge branch 'main' into sim

    @cpanuski
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Commits on Apr 26, 2023

  1. Updates for simulated wavefront cal.

    @cpanuski
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Commits on Apr 30, 2023

  1. Add affine transformations cam<->slm 

    + other cleanup
    @cpanuski
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Commits on May 20, 2023

  1. First pass at 3D spots.

    @ichristen
    ichristen committed May 20, 2023
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Commits on May 21, 2023

  1. First pass at single shot phase measurement. Also cleaning.

    @ichristen
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Commits on May 23, 2023

  1. Debugged one-shot. Some docs and behavior changes. 

    - Swapped None and 0 for phase_steps.
- Saved the old phase calibration.
    @ichristen
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  2. Final debugging.

    @ichristen
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  3. Merge branch 'wavefront_calibration_upgrade' of https://github.com/QP… 

    …G-MIT/slmsuite into spot_3d
    @ichristen
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Commits on May 26, 2023

  1. Docs and formatting

    @cpanuski
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  2. Merge remote-tracking branch 'origin/wavefront_calibration_upgrade' i… 

    …nto sim
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Commits on May 28, 2023

  1. Bugfixes; add rotation capabilities to fitting

    @cpanuski
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  2. Cleanup

    @cpanuski
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Commits on May 30, 2023

  1. 3D Spots working. Depth handling and focal conversions implemented.

    @ichristen
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  2. Missed line.

    @ichristen
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Commits on Jun 1, 2023

  1. Small comments.

    @ichristen @tpr0p
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Commits on Jun 7, 2023

  1. Added clarification for design and operating wavelengths.

    @ichristen
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Commits on Jun 16, 2023

  1. CUDA kernel finalization.

    @ichristen
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  2. Added assign_vectors.

    @ichristen
    ichristen committed Jun 16, 2023
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  3. AlliedVision destruction fix.

    @ichristen
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  4. CUDA fallsback to cupy.

    @ichristen
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Commits on Jun 26, 2023

  1. First pass from a while ago.

    @ichristen
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Commits on Jun 27, 2023

  1. CUDA updates.

    @ichristen
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Commits on Jul 6, 2023

  1. Intermediate.

    @ichristen @tpr0p
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  2. Merge branch 'spot_3d' of github.com:QPG-MIT/slmsuite into spot_3d

    @tpr0p
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Commits on Aug 13, 2023

  1. Increase smallest integration window size

    @cpanuski
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Commits on Aug 15, 2023

  1. Switch sim camera to interpolation-based calculation. 

    +PSF tweaks
    @cpanuski
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  2. Imaging speed boost with cupyx

    @cpanuski
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Commits on Aug 21, 2023

  1. Simulation documentation + add ons 

    + Tied together slm.spot_radius_kxy() and fs.get_farfield_spot_size()
+ Enable simulation.ipynb example
    @cpanuski
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  2. Merge branch 'main' into sim

    @cpanuski
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  3. Zernike upgrades, CUDA exploration, zero_weights.

    @ichristen
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Commits on Aug 22, 2023

  1. Typo/uniformity/commenting pass. See other commentary in pull request.

    @ichristen
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Commits on Aug 29, 2023

  1. Added lattice fitting to fourier_calibration 

    -More cleanup required
-Hardware testing required
-Removed mask with border (was causing off by one issues when a large mask was used)
    @cpanuski
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  2. Merge branch 'sim' of https://github.com/QPG-MIT/slmsuite into sim

    @cpanuski
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Commits on Aug 30, 2023

  1. Update fourier_calibration plotting

    @cpanuski
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Commits on Aug 31, 2023

  1. New fourier_calibration clustering; bugfixes

    @cpanuski
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  2. Fix off-by-one bug

    @ichristen
    ichristen committed Aug 31, 2023
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  3. Depreciated "connect4" blob_array_detect technique

    @ichristen
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Commits on Sep 3, 2023

  1. Bugfixes and warnings for fourier_calibration 

    Now hardware tested.

Co-Authored-By: Chris Panuski <[email protected]>
    @ichristen @cpanuski
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Commits on Sep 5, 2023

  1. Bundled all illumination parameters under slm.source 

    Simplifies source setting, plotting, and tracking.

Need to debug documentation (probably added a few issues) and get autoformatters on same page.
    @cpanuski
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  2. Move simulated camera image plotting to superclass

    @cpanuski
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Commits on Sep 15, 2023

  1. Swapped to affine transform-based camera

    @cpanuski
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Commits on Sep 19, 2023

  1. Use numpy for grid variables.

    @ichristen
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  2. Merge branch 'sim' of https://github.com/QPG-MIT/slmsuite into sim

    @ichristen
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  3. Slight edits to transform_grid().

    @ichristen
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Commits on Oct 29, 2023

  1. Filter 0 order in Fourier Cal, add basic camera noise 

    Also update logo.
    @cpanuski
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Commits on Nov 6, 2023

  1. Implement camera frame averaging 

    In response to #55; uses the same format as SLM hardware interface methods.

+ Limited curve fitting steps in wavefront calibration
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Commits on Nov 13, 2023

  1. Add ability to clone experiment to simulation 

    + associated debugging of sim mode.

Need to check if I broke "fwd" mode of transform_grid

Co-Authored-By: Chris Panuski <[email protected]>
    @ichristen @cpanuski
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  2. Adjusted affine building methods for sim cams

    @cpanuski
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Commits on Nov 26, 2023

  1. Doc typo fixed

    @cpanuski
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  2. Merge branch 'sim' into spot_3d

    @cpanuski
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  3. Bugfixes and mp->xp

    @cpanuski
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Commits on Mar 10, 2024

  1. Merge branch 'spot_3d' of https://github.com/QPG-MIT/slmsuite into sp… 

    …ot_3d
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Commits on Mar 30, 2024

  1. Zernike updates, kernel revamp.

    @ichristen
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  2. Remaining phase issues.

    @ichristen
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Commits on Apr 1, 2024

  1. Calibration fleshing, PyData docs.

    @ichristen
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  2. Finished fleshing.

    @ichristen
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Commits on Apr 3, 2024

  1. Small modifications to index and santec.

    @ichristen
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  2. Debugging and cleanup.

    @ichristen
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  3. Merge branch 'simutaneous_wavefront_calibration' of https://github.co… 

    …m/QPG-MIT/slmsuite into simutaneous_wavefront_calibration
    @ichristen
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Commits on Apr 6, 2024

  1. Small docs update.

    @ichristen
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  2. Merge branch 'simutaneous_wavefront_calibration' of https://github.co… 

    …m/QPG-MIT/slmsuite into simutaneous_wavefront_calibration
    @ichristen
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  3. Minor Tests

    @ichristen
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  4. Merge branch 'simutaneous_wavefront_calibration' of https://github.co… 

    …m/QPG-MIT/slmsuite into simutaneous_wavefront_calibration
    @ichristen
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  5. Merge branch 'spot_3d' of https://github.com/QPG-MIT/slmsuite into si… 

    …mutaneous_wavefront_calibration
    @ichristen
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Commits on Apr 8, 2024

  1. Reorganization and CUDA fleshing.

    @ichristen
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Commits on Apr 14, 2024

  1. Major reorganization. Unit conversion modernization. Documentation an… 

    …d cleanup.
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  2. rint is purportedly 5x faster than around

    @ichristen
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Commits on Apr 19, 2024

  1. Moved files to analysis. Documentation and cleanup.

    @ichristen
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Commits on Apr 29, 2024

  1. Replaced dx_um, dy_um with pitch_um, ... Reorganized `SimulatedCamera… 

    …._build_affine`, general cleanup and documentation.
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Commits on Apr 30, 2024

  1. Reorganized cameraslms. Some fixes to slm. Docs.

    @ichristen
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Commits on May 1, 2024

  1. Fixes for sim.

    @ichristen
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Commits on May 2, 2024

  1. Files changes from main.

    @ichristen
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  2. Merge branch 'main' into dev

    @ichristen
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  3. Added warning to convert_blaze_vector().

    @ichristen
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  4. Possible calibration renovations.

    @ichristen
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Commits on Jun 18, 2024

  1. Calibration revamp, cleanup. 

    Also:
- smallest_distance divide and conquer
- docs polish and rejig
- copied settle_time branch
- pixel_calib polish
- new Zernike wavefront calibration
- moved Hologram.methods to .flags
- quadratic initial phase
- some variable hiding
- parabola fitfunction
- cleaned phase functions to remove offset vars (functionality is equivalent to +=)
    @ichristen
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  2. Merge pull request #70 from QPG-MIT/calibration_changes 

    Calibration changes
    @ichristen
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  3. Merge and edit instrumental branch.

    @ichristen
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  4. Update alliedvision.py

    @ichristen
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  5. Removed slmsuite-examples as submodule.

    @ichristen
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  6. Small update to docs on torch.

    @ichristen
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  7. Renamed slm= to hardware=.

    @ichristen
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Commits on Jun 19, 2024

  1. Poking and debugging.

    @ichristen
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  2. Create slmsutite-notext-512x512.png

    @ichristen
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Commits on Jun 20, 2024

  1. Slight compressed tidying.

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Commits on Jun 21, 2024

  1. Intermediate push.

    @ichristen
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  2. Use copy=None for numpy 2.0.0+

    @ichristen
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Commits on Jun 24, 2024

  1. Revamp of zernike_sum for batching. Reconstruction of cupy compre… 

    …ssion option.
    @ichristen
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Commits on Jun 25, 2024

  1. Cleanup CompressedSpot

    @ichristen
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Commits on Jul 2, 2024

  1. HDR imaging. Pyramid axes.

    @ichristen
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  2. HDR docs fix.

    @ichristen
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Commits on Jul 4, 2024

  1. Docs, camera HDR/averaging polish, Holoeye skeleton.

    @ichristen
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Commits on Jul 5, 2024

  1. Docs, Zernike pyramid/string/fit, vortex detection, dtype fix.

    @ichristen
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  2. CUDA edits.

    @ichristen
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  3. Merge branch 'dev' of https://github.com/QPG-MIT/slmsuite into dev

    @ichristen
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Commits on Jul 7, 2024

  1. MultiplaneHologram, and Hologram renovations for compatibility.

    @ichristen
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Commits on Jul 11, 2024

  1. Intermediate fixes and docs.

    @ichristen
    ichristen committed Jul 11, 2024
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  2. Merge branch 'dev' of https://github.com/QPG-MIT/slmsuite into dev

    @ichristen
    ichristen committed Jul 11, 2024
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  3. Fix MRAF numpy compatibility.

    @ichristen
    ichristen committed Jul 11, 2024
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Commits on Jul 16, 2024

  1. Docs, images, renaming, write_image.

    @ichristen
    ichristen committed Jul 16, 2024
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Commits on Jul 19, 2024

  1. Docs, multiplane, vortices, etc.

    @ichristen
    ichristen committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. plot(), docs, zernike wavefront, realistic defocus

    @ichristen
    ichristen committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. Small docs and cleanup.

    @ichristen
    ichristen committed Jul 23, 2024
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  2. "moments" is default method for speed, enhanced erroring.

    @ichristen
    ichristen committed Jul 23, 2024
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  3. Assorted debugging and documetation. get_z vs z_get.

    @ichristen
    ichristen committed Jul 23, 2024
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Commits on Jul 26, 2024

  1. np 2.0.0 backwards compatibility. Other debugging. Removing .gif bloa… 

    …t to examples.
    @ichristen
    ichristen committed Jul 26, 2024
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