NAMESPACE

S3method(as.BGData, BEDMatrix)
S3method(as.BGData, ColumnLinkedMatrix)
S3method(as.BGData, RowLinkedMatrix)
S3method(findRelated, matrix)
S3method(findRelated, symDMatrix)
export(BGData)
export(GWAS)
export(as.BGData)
export(chunkedApply)
export(chunkedMap)
export(findRelated)
export(FWD)
export(geno)
export("geno<-")
export(getG)
export(getG_symDMatrix)
export(load.BGData)
export(map)
export("map<-")
export(orderedMerge)
export(pheno)
export("pheno<-")
export(preprocess)
export(readRAW)
export(readRAW_big.matrix)
export(readRAW_matrix)
export(segments)
export(summarize)
exportClasses(BGData)
exportMethods(geno)
exportMethods("geno<-")
exportMethods(pheno)
exportMethods("pheno<-")
exportMethods(map)
exportMethods("map<-")
importFrom(BEDMatrix, BEDMatrix)
importFrom(LinkedMatrix, ColumnLinkedMatrix, LinkedMatrix, nNodes)
importFrom(symDMatrix, nBlocks, symDMatrix)
import(methods)
importFrom(parallel, mclapply)
importFrom(crochet, convertIndex)
importFrom(bigmemory, attach.big.matrix, big.matrix, filebacked.big.matrix)
importFrom(synchronicity, boost.mutex, lock, unlock)
importFrom(ff, as.ff, ff, vt)
importFrom(bit, physical, "physical<-")
importFrom(stats, coef, lsfit, ls.print, model.frame, model.matrix, na.pass,
                  pnorm, sd, terms, update)
importFrom(utils, read.table, type.convert)
importClassesFrom(BEDMatrix, BEDMatrix)
importClassesFrom(LinkedMatrix, LinkedMatrix)
importClassesFrom(bigmemory, big.matrix)
importClassesFrom(symDMatrix, symDMatrix)
useDynLib(BGData, .registration = TRUE, .fixes = "C_")