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{version="2.2.0", optional=true} #For the HTTP service ruff = {version="^0.1.5", optional=true} black = {version="24.3.0", optional=true} -mypy = [ - {version=">=0.812,<0.900", optional=true, python = "<3.10"}, - {version=">=0.900,<0.1000", optional=true, python = ">=3.10"} - ] +mypy = {version=">=1.13.0", optional=true} types-setuptools = {version="*", optional=true} platformdirs = {version="*", optional=true} coverage = {version=">6,<7,!=6.0.*,!=6.1,!=6.1.1", optional=true} @@ -91,10 +88,7 @@ coverage = {version=">6,<7,!=6.0.*,!=6.1,!=6.1.1", optional=true} pytest-cov = {version="^2.8.1", optional=true} ruff = {version="^0.1.5", optional=true} black = {version="24.3.0", optional=true} -mypy = [ - {version=">=0.812,<0.900", optional=true, python = "<3.10"}, - {version=">=0.900,<0.1000", optional=true, python = ">=3.10"} - ] +mypy = {version=">=1.13.0", optional=true} types-setuptools = {version="*", optional=true} platformdirs = {version="*", optional=true} @@ -249,7 +243,7 @@ commands_pre = poetry run pip3 install "mypy>=0.812" "types-setuptools" commands = - poetry show - poetry run python3 -m mypy --ignore-missing-imports pyshacl + poetry run python3 -m mypy --python-version 3.9 --ignore-missing-imports pyshacl [gh] # Don't include lint or type-checking in gh-actions matrix diff --git a/pyshacl/extras/js/rules.py b/pyshacl/extras/js/rules.py index bd16557..9ae2acc 100644 --- a/pyshacl/extras/js/rules.py +++ b/pyshacl/extras/js/rules.py @@ -1,7 +1,6 @@ # # -import typing -from typing import List, Sequence, Union +from typing import TYPE_CHECKING, List, Optional, Sequence, Union import rdflib @@ -11,7 +10,9 @@ from .js_executable import JSExecutable -if typing.TYPE_CHECKING: +if TYPE_CHECKING: + + from rdflib.term import URIRef from pyshacl.pytypes import GraphLike, RDFNode, SHACLExecutor from pyshacl.shape import Shape @@ -19,6 +20,8 @@ SH_JSRule = SH.JSRule +JS_RULE_ITERATE_LIMIT = 100 + class JSRule(SHACLRule): __slots__ = ('js_exe',) @@ -32,6 +35,7 @@ def apply( self, data_graph: 'GraphLike', focus_nodes: Union[Sequence['RDFNode'], None] = None, + target_graph_identifier: Optional['URIRef'] = None, ) -> int: focus_list: Sequence['RDFNode'] if focus_nodes is not None: @@ -48,10 +52,10 @@ def apply( return 0 focus_list = filtered_focus_nodes all_added = 0 - iterate_limit = 100 + iterate_limit = int(JS_RULE_ITERATE_LIMIT) while True: if iterate_limit < 1: - raise ReportableRuntimeError("Local rule iteration exceeded iteration limit of 100.") + raise ReportableRuntimeError(f"JS rule iteration exceeded iteration limit of {JS_RULE_ITERATE_LIMIT}.") iterate_limit -= 1 added = 0 applicable_nodes = self.filter_conditions(focus_list, data_graph) @@ -72,10 +76,17 @@ def apply( if this_added: added += 1 if added > 0: - all_added += added + if isinstance(data_graph, (rdflib.Dataset, rdflib.ConjunctiveGraph)): + if target_graph_identifier is not None: + target_graph = data_graph.get_context(target_graph_identifier) + else: + target_graph = data_graph.default_context + else: + target_graph = data_graph for s in sets_to_add: for t in s: - data_graph.add(t) + target_graph.add(t) + all_added += added if self.iterate: continue # Jump up to iterate else: diff --git a/pyshacl/inference/custom_rdfs_closure.py b/pyshacl/inference/custom_rdfs_closure.py index fd40d51..e222c84 100644 --- a/pyshacl/inference/custom_rdfs_closure.py +++ b/pyshacl/inference/custom_rdfs_closure.py @@ -55,8 +55,9 @@ class CustomRDFSOWLRLSemantics(CustomRDFSSemantics, OWLRL_Semantics): ] def __init__(self, graph, axioms, daxioms, rdfs: bool = True, destination: Optional['Graph'] = None): - OWLRL_Semantics.__init__(self, graph, axioms, daxioms, rdfs=rdfs, destination=destination) - CustomRDFSSemantics.__init__(self, graph, axioms, daxioms, rdfs=rdfs, destination=destination) + # MyPy thinks this is object.__init__ and says the kwargs are incorrect for __init__ + OWLRL_Semantics.__init__(self, graph, axioms, daxioms, rdfs=rdfs, destination=destination) # type: ignore[arg-type, call-arg] + CustomRDFSSemantics.__init__(self, graph, axioms, daxioms, rdfs=rdfs, destination=destination) # type: ignore[arg-type, call-arg] self.rdfs = True # noinspection PyMethodMayBeStatic diff --git a/pyshacl/rdfutil/inoculate.py b/pyshacl/rdfutil/inoculate.py index 28deff7..83e85fc 100644 --- a/pyshacl/rdfutil/inoculate.py +++ b/pyshacl/rdfutil/inoculate.py @@ -32,8 +32,8 @@ def inoculate(data_graph: rdflib.Graph, ontology: GraphLike) -> rdflib.Graph: data_graph_ns = data_graph.namespace_manager if isinstance(ontology, (rdflib.ConjunctiveGraph, rdflib.Dataset)): - # always set default context true on the ontology DS - ontology.default_context = True + # always set default_union true on the ontology DS + ontology.default_union = True # Bind any missing ontology namespaces in the DataGraph NS manager. if ontology_ns is not data_graph_ns: data_graph_prefixes = {p: n for (p, n) in data_graph_ns.namespaces()}