forked from mrc-ide/squire
-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
74 lines (73 loc) · 1.91 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
# Generated by roxygen2: do not edit by hand
S3method(plot,squire_pmcmc)
S3method(plot,squire_pmcmc_list)
S3method(plot,squire_scan)
S3method(plot,squire_simulation)
S3method(print,squire_simulation)
S3method(summary,squire_pmcmc)
S3method(summary,squire_pmcmc_list)
S3method(summary,squire_simulation)
export(adjusted_eigen)
export(align)
export(beta_est_explicit)
export(beta_est_simple)
export(calibrate)
export(create_master_chain)
export(default_durations)
export(default_probs)
export(drjacoby_mcmc)
export(explicit_model)
export(extract_ICU_occ)
export(extract_deaths)
export(extract_hospital_occ)
export(extract_infection_incidence)
export(format_deterministic_output)
export(format_output)
export(format_output_simple_model)
export(get_elderly_population)
export(get_healthcare_capacity)
export(get_lmic_countries)
export(get_mixing_matrix)
export(get_population)
export(parameters_explicit_SEEIR)
export(parameters_simple_SEEIR)
export(pmcmc)
export(projection_plotting)
export(projections)
export(run_deterministic_SEIR_model)
export(run_explicit_SEEIR_model)
export(run_simple_SEEIR_model)
export(sample_drjacoby)
export(trigger_projections)
import(coda)
import(furrr)
importFrom(dde,difeq)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matlines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(magrittr,"%>%")
importFrom(mvtnorm,rmvnorm)
importFrom(odin,odin)
importFrom(rlang,.data)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,dbinom)
importFrom(stats,dnbinom)
importFrom(stats,median)
importFrom(stats,plogis)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rexp)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(viridis,cividis)
useDynLib(squire, .registration = TRUE)